Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_4655 |
Symbol | |
ID | 5672998 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 5554002 |
End bp | 5555609 |
Gene Length | 1608 bp |
Protein Length | 535 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641243513 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001508929 |
Protein GI | 158316421 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4585] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTCTG CTTCGAGGGG GGCCACGCGG CGCCAGGGTC CGTGCCGGAC CGGGGCGGGC CACGGTGGGG ATACGGCCGG CTGTTGCGAT GCCGGGGATC TGCTGGACTC GTTGGGCGAG GTGGTGTTCC GGACCGACGC GGAGGGTTGT TGGACGTATC TGAACCGGGC GTGGACGACC CTGACCGGCT TCGATGTCGT GGCCAGCCTG GGTGCCCAGT TCCTGGACTA TGTTCACCCG GACGAGGTGG AGGCCACGGT CGCGTTGTTC ATGGGTGTCG TCGCGGGGGG TGCCGATCAC TGTCACCACG AGACCCGCTA CCGCACCCGG GACGGCAGCT ACCGGCGGGT CCAGATCAGG GCGACCGTCC TGCGGGACGC GGCGGGCGTG GTGGTCGGCA ACACCGGGAC GATCCTGGAC GTCACCGCCG CCCGCCGTGA CGCGCAGACC GTCGGGGAAC ACGCCGCGCT GCTGGAGTTG GTGTCCGCAG GGGTACCCGC CGGCGAGCTG CCGGTTGGGG TGGCGGTGTA TGACGCCGAC CTGCGGCTGT GGCGTGGTTC ACCGGTCCTG GACCAGATCG CTCGTGTGCC CCAGCGTGTG GGGGATCGTC TTGCCCAGCT GGCCGAACGG CTCTCGCCGG CGGCCGGGCC GCGGCAGCGC TCGCTGGGTG GCGAGTGGGG CATGATCGCG GCTGCGCTGC GTACCCACCA CGCCCAGGTC GGTGATCTCG ACCTCGTGGG GGAGCGCGGT ACCGGCCGGT CGATGCGGGT CACAGTGATC CCATACGTAC GGGGCGGTGA GGAGATGCTC GCGCTCGTCT TCACCGACAT CACCGACCTG CGCCGCGCCG AGCGCGAGCT GCGCCGGCTC TACGAGCAGG CGGAACGGAG CCGGGCCTGG CTGGCGGCGA GCACCGAGAT CACGACCAGC GTGCTGGCCG CCCCGGATCC ATGCGAGGCT CTCGGTCGCG TCGCGCGGAT GGGCCGGCGG ATGGCCGCCG CGGACCTGTC CCTGGTCGCC GTGCCCGACG AGCACGGCAC CCTGGTCGTG ACCGCCGCCT CCGTAGCCCC CGACCTTCCC GCCGACGCCG ACGCCCTACC AGGGCTGACC GTCACTCTCC GCGCCGCGCC AGGAGCCGGC GTGCTCAACG CAGGCCACGC CGTTGTCCTG GACGGCCTAC AGCTGCGGGG GAACCGGGTC GTCCACGCGC CGACGCTGCC CCTCGCCGCG GCGCTGGCCG TGCCGCTACG AATCGCCGGG CATCAGGCGG CGATCCTTCT CCTCGCCCAC CGGAGCAGCA CGGCTCGCCT TCCGGCGCGC GACATCGAAC TGGTCGAGGG CTTCGCCGCC GACGCCGCGC TCGCCCTCGA ACTAGCCCAG GCACACCAGG AACGTGCCCG CCTGGCGGTC TTCGAGGACC GCGACCGCAT CGCCCGCGAC CTCCATGACC TGGTCCTCCA ACGGCTGTTC GCCATCGGCC TGCACCTGCA GTCCCTAGCC CGCGCCGCCG GCGACATGAT CGGCGCACGA CTCACCGCGG CCATCGACGC CCTCGACCAG ACCATCGAGG AAATCCGCCG CACAATCCTG CAGGTACAAC CCTCATGA
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Protein sequence | MTSASRGATR RQGPCRTGAG HGGDTAGCCD AGDLLDSLGE VVFRTDAEGC WTYLNRAWTT LTGFDVVASL GAQFLDYVHP DEVEATVALF MGVVAGGADH CHHETRYRTR DGSYRRVQIR ATVLRDAAGV VVGNTGTILD VTAARRDAQT VGEHAALLEL VSAGVPAGEL PVGVAVYDAD LRLWRGSPVL DQIARVPQRV GDRLAQLAER LSPAAGPRQR SLGGEWGMIA AALRTHHAQV GDLDLVGERG TGRSMRVTVI PYVRGGEEML ALVFTDITDL RRAERELRRL YEQAERSRAW LAASTEITTS VLAAPDPCEA LGRVARMGRR MAAADLSLVA VPDEHGTLVV TAASVAPDLP ADADALPGLT VTLRAAPGAG VLNAGHAVVL DGLQLRGNRV VHAPTLPLAA ALAVPLRIAG HQAAILLLAH RSSTARLPAR DIELVEGFAA DAALALELAQ AHQERARLAV FEDRDRIARD LHDLVLQRLF AIGLHLQSLA RAAGDMIGAR LTAAIDALDQ TIEEIRRTIL QVQPS
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