| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4627 |
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| Symbol | |
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| ID | 5672971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 5517176 |
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| End bp | 5518933 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641243486 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001508902 |
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| Protein GI | 158316394 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTGCGAC AGGGGGGAGA AGGCTCGGGT CTGTTCGACC TGATGGAGAT CGGGCTGGGC
ATCATTGGGG TCGCCGATTA TCGGGTGCGC AGGGTGAATC AGGCCACGTG CCGGATCCTC
GGACGGAACG AGGATGAACT CGTTGGTGTC CGGTGGGAGA CGCTGGTCCA TCCAGATGAC
CGGGAGGCTC ACCTGGCAGA AGCGCGACAG AACCAGGCCG CTGGCCAGAC CCACTGGCAG
GGCGTCGTCC GCTTCGTGCA GCCGAGCGGG TCTGTCGTGT ACGTTCTGGC GACGTCGGTG
ATCCTGACCG ACGACGTGCC CCCCGCGGAA GCCGAACGGC CCTATTTCCT CGTCCAGTTC
CAGGATCTCA GCCAGCAGTT GGCGTCGCAC CGCCACCTTC GGCTCGTCAT GGAAAACACC
CCAGTCACCC TGGCCCTGGT CGACAGGGAC GGCTGCGTCC TGTTCAACGA GGGTGCGATA
GGCGAAGACG CGGTCCGACG CCTGGAGATC GCGCGGCGGC GCAGCATCTT CGAGGTCTTC
CGAGATCTAC CTGATGCCCT GGATCTGACC CGCCGAGCGC TGGCAGGCCA GCGCGCCTGC
GGCGTCTTCT CCGCCTACGG ACACTGGTAC GAATCACAAA CGGTTCCGAT CTGCGATGCG
CAGGGTGTCG TGCAGTCGGT CGCCATCGTG TCCCACGACG TGACCGAGCG GGAGATCGCA
CTGGCCGAGC TGCGCGCCCG ATCTGCTGAA CAGTCACTGG TGGCGAAGAT CGGGCGGTGC
GCGCTGGGCA GCCCCGATCC GGCATCTCTC TGGCATCAGG CGACGACAGC GATCTCAGGC
CACCTGTGTG CCGATCAGGT GACTATCAGG GCGGCCGATC CGGACTCCGG TCTACCACAC
GTCGTTGCCA CGGCTGGTTC GGCGGCACCG TATTACCCGT CTCCCCCACC ATCAGCCGCG
CCGGACGGAA CGGCGCTCGC GGGCAGCCGT ACCGACCCGC CCCGTGGGAT CGCGGCGGAC
AGCGCGTCCT CATCCCTGAC CATCCCGATC GGCCAGCCTG ACAACCCCGG CGCTCTGCTC
ACCATCGACC GCCGCAACCC CGGTTCCTTC GCGCGTCATG AGGTGATGTT TCTCGAGATG
ATGGCGACCG TGCTGGCAGC GGCCGACGAG CGCTTCCGCA TCGAACGTGA CGCCCAATAT
CAGGCCCGGC ACGACGGGCT CACCGGGCTA CCGAACCGAA CCGCGTTCCT GGACCACCTG
CAGCGGACCC TGACCCGTGC CGGACACGAC CGCCGTCGCA CCGGGCTCCT GTTTATCGAC
CTCGACAACT TCAAGAAGGT CAACGATTCG TACGGTCACC AGACCGGCGA CGACCTGCTC
CGCGAGGTGG CCGCCCGGCT CCAGCGGGCC GTCCGTCCCG AGGACAGCGT CGCCCGCCTC
TCCGGTGACG AGTTCGCTGT GCTCTGCGAC CGCGACCCCG CGTTACCCGA CGTCCAGGCC
ATCGCCCGGC GCATCGTCAC CACCCTCGCC ACCCCACGGA TCGTTCTCGC TGGCCAGCCG
ATCACGGTCG CCGCCAGCAT CGGGATCGCG CACTCCGACG GCCAGCCCAT CGACGCCGAC
GAATTCCTGT GTACTGCCGA CATGGCGATG TACGCGGCGA AGCGGCAGGG TCCAGGTCGC
TTCCTTGTCT TTGACGAGTC GATGCGGACC CACATTCGCC GCCGATTCGA CACAAGAACA
ACAGCCGGTG GACGCTGA
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| Protein sequence | MVRQGGEGSG LFDLMEIGLG IIGVADYRVR RVNQATCRIL GRNEDELVGV RWETLVHPDD
REAHLAEARQ NQAAGQTHWQ GVVRFVQPSG SVVYVLATSV ILTDDVPPAE AERPYFLVQF
QDLSQQLASH RHLRLVMENT PVTLALVDRD GCVLFNEGAI GEDAVRRLEI ARRRSIFEVF
RDLPDALDLT RRALAGQRAC GVFSAYGHWY ESQTVPICDA QGVVQSVAIV SHDVTEREIA
LAELRARSAE QSLVAKIGRC ALGSPDPASL WHQATTAISG HLCADQVTIR AADPDSGLPH
VVATAGSAAP YYPSPPPSAA PDGTALAGSR TDPPRGIAAD SASSSLTIPI GQPDNPGALL
TIDRRNPGSF ARHEVMFLEM MATVLAAADE RFRIERDAQY QARHDGLTGL PNRTAFLDHL
QRTLTRAGHD RRRTGLLFID LDNFKKVNDS YGHQTGDDLL REVAARLQRA VRPEDSVARL
SGDEFAVLCD RDPALPDVQA IARRIVTTLA TPRIVLAGQP ITVAASIGIA HSDGQPIDAD
EFLCTADMAM YAAKRQGPGR FLVFDESMRT HIRRRFDTRT TAGGR
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