| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4521 |
|---|
| Symbol | |
|---|
| ID | 5672870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5393603 |
|---|
| End bp | 5394772 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641243386 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001508802 |
|---|
| Protein GI | 158316294 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.461003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGC CGGTTGGCTC CGGCCCGCTC GCAGGGACGC GCGTCCTTGA GATCGCGGGC
CGGGGCCCCG GCCCCTTCGC GGGCATGCTC CTGGCGGACA TGGGAGCGGA GATCCTGCGC
ATCGACCGGC CGGATCCCCC CGCCCGTCCG CAGGCGCCCG ACCACCGCCT GGAGCTGTAC
AACCGCGGAC GACGCTCCGT GGTCGTCGAT CTCAAGCACG GAGCCGGCCC CGAGGTGGTG
CTGCGTCTGG TCGAACGGGC GGACGCGATC TACGAGGGGT ACCGGCCCGG CGTCGCCGAA
CGTCTCGGGA TCGGCCCGGA CGCGTGCCTG CAGCGAAACC CACGGATCGT CTACGGGCGC
GGCACGGGCT GGGGGCAGAC CGGGCCCCTG GCGGACAAGG CCGGCCACGA CATCAACTAC
ATCGCGCTCG CCGGGGCGCT CGACCCCCTC GGCTACGCGG GCGGGCCGCC CGCCATCCCG
CTCAACCTGA TCGGTGACTA CGCGGGCGGA GGCATGATGC TCGCCTTCGG CATCGTGTGC
GCGCTGCTGG AGGCGCGCGG CTCGGGCCGG GGCCAGGTGG TCGACGCGGC GATGGTGGAC
GGGGCGTCGC TGCTCATGAC CCTGTACCAC GGACGTCGGA TGATGGGCAC GTGGAGCGAC
GAACGCGGCA CGAACTACGT GGACTCCGGC GCGCCGTTCT ACAACGTCTA CGAGACGAGC
GACCACCGGT ACGTCGCGAT CGGCGCGATC GAGCCGAAGT TCCAGCGGGT GCTGTTCGAC
GCCATCGGCG TGGACCTCGA CGGCATCACC ATGCCGGTGT CGACGATCGA CCGTACCGAC
TGGGCCGAAC TGCGGCGCCG GCTCGCGGCG GTCTTCGTGA CCCGCACCCG CGACGAGTGG
ACCAAGCTGC TCGCCGACGT CGACGGCTGC TACTCGCCCG TGCTGTCCCT CGGGGAGGTG
TCCGCACATC CCCATCACCA GGCGCGTGCC GGCTTCCCGG AACTCGACGG AATCCCCCAT
CCCGCGCCGG CGCCCCGGTT CGGGCGGACC CCGGCGGCCA TCCGGACGGC CCCGCCCAGG
CCCGGGGAGC ACACCCGGGA AGCCCTGGCG GACTGGGGCT TCACCGACGA CGAACTGCAG
ACGCTGCACC GGGACGGCGC AATCCGGTAG
|
|---|
| Protein sequence | MSLPVGSGPL AGTRVLEIAG RGPGPFAGML LADMGAEILR IDRPDPPARP QAPDHRLELY
NRGRRSVVVD LKHGAGPEVV LRLVERADAI YEGYRPGVAE RLGIGPDACL QRNPRIVYGR
GTGWGQTGPL ADKAGHDINY IALAGALDPL GYAGGPPAIP LNLIGDYAGG GMMLAFGIVC
ALLEARGSGR GQVVDAAMVD GASLLMTLYH GRRMMGTWSD ERGTNYVDSG APFYNVYETS
DHRYVAIGAI EPKFQRVLFD AIGVDLDGIT MPVSTIDRTD WAELRRRLAA VFVTRTRDEW
TKLLADVDGC YSPVLSLGEV SAHPHHQARA GFPELDGIPH PAPAPRFGRT PAAIRTAPPR
PGEHTREALA DWGFTDDELQ TLHRDGAIR
|
|---|
| |