Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_4508 |
Symbol | |
ID | 5672857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 5378942 |
End bp | 5380561 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641243373 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001508789 |
Protein GI | 158316281 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGCGACA TTCTAGGCCG GTCGAGATTC GATCTTATCG GCGGTACCTG GGACGCTCTG GAGCCTCCCC CTGACGGTAA CGGCTGGGAG GATGTGTCGC AGCTGCTGAA CGGCGAACGG ATTGTGTTGC GGCATCTGAC CCGGTTCGCC CGCCTCGATG GCAGCGTGAT TCATATCGTG ATAACGACCC GAGTTGAGAA GTACGCAGAC GAGCCCTGCT GTCTCGGCCA GATACTAGAC GTGACCGACG CTGCCGTTAC TCGCGACCAA TTGCAGCTGA TATTGGAAAA CAGTCCTGTT TCCATGGGGC TTACAGATCT ATCCGGCCGG ATCTTAGTAT CAGGTGGCGG CTCCGTTCCT GCCCTGGCCG AGGACCTGGA GGCTGCTGGG CGGACGTCCA TCTTCGAGGT TTTCAAGCAC ACCCCGGATA CGCTGACAAT GATGCGACGA GCGATGGACG GCGAGCCGTC CATCGGAATG ATCCAGGCCT ACGGACACTC CTACGACCTC CACATTAGGC CGATCCGTAA TCCGGCCGGG CAGGTCAGCC ACGTTGCTTC GATCGCCACA GACGTGACGG AGCGCGAACG AGCACATGAT GAGCAGAGCA CCGTCACCGA ACTGGCTCAT CAGGCGTTGC AGATCGTGGA GCCGGAACGG TTGTGGAACC ACGCCGCCGC CGTCCTAGCC AGCCGGCTGG ACGCGGCCGT CACCGTGCAT ATGACCGAAC CAGGACACGG ACCTGACCTG ATCGCCGCGG TTGGAGTGCT GCCACCGGCT CCCGTCACCG CTGCGGCTGT CCGGGACGCC CTCCTAATCG GGCCGCCGGA CCAGGGCAAC GTAACAGGCG CGCGGAACCT CCGCCGGACG GGGCGCTGGT TAACTGTGTC CCTGCCGCTC GGCCGACCCA ACGCGCCCGC CGCCATCCTC ACCATCCACC GGACGGACCG GGAGCTTCAC GAAGACGACA GCCAGGAAAC GGCAGCCGAG CCGTTCACAC CTGGCGAGGT GGAATTCGTC GATGCGGTCG CCAGTGTGCT TGGTGCCGCA GCGGTCCGGT TCGCGATGGA ACGCGAAGCC AACTACCGTG CGTTGCACGA CAGCCTGACC GACCTCCCCA ACCGCGTCGC CCTGCTCGAC CGGCTCAAGT GCAACCTCGA ACAAAGCCGG AGCGACGGTC TCCGTACCGG CGTCATATTC ATCGATTTGG ACGGTTTTAA GATTGTAAAT GACAGCCTCG GTCATCTTGT CGGCGACGAC GTCCTGCGTG AGGTAGCCGA CCGCCTGCGC GCCTCGGCCC GGCCGAATGA CGTCGTGGCC CGGCTTGCCG GCGACGAGTT CGCGATCCTC TGCGAACAGG TCTCCACGAT CATGGAACTC GAGCGAGCGG CGCACGGTGT CATCACCGCA CTTGCCAAGC CGATCGCGCT ACCGGAAGCC GACGTTACAA TTACCGCCAG TGCCGGAGTG GCAATCTCGG GTACCGGCCT CGCCAATGCC GATCGGCTCC TCAACGCCTC CGACGTCGCG ATGTACGTTG CGAAACGAGC CGGACCCGGC CACTGCGTCG CTTACCAGCC GGCCATGCGC CTCGACCAGG CGACGTCACC GGCCCGGTAG
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Protein sequence | MCDILGRSRF DLIGGTWDAL EPPPDGNGWE DVSQLLNGER IVLRHLTRFA RLDGSVIHIV ITTRVEKYAD EPCCLGQILD VTDAAVTRDQ LQLILENSPV SMGLTDLSGR ILVSGGGSVP ALAEDLEAAG RTSIFEVFKH TPDTLTMMRR AMDGEPSIGM IQAYGHSYDL HIRPIRNPAG QVSHVASIAT DVTERERAHD EQSTVTELAH QALQIVEPER LWNHAAAVLA SRLDAAVTVH MTEPGHGPDL IAAVGVLPPA PVTAAAVRDA LLIGPPDQGN VTGARNLRRT GRWLTVSLPL GRPNAPAAIL TIHRTDRELH EDDSQETAAE PFTPGEVEFV DAVASVLGAA AVRFAMEREA NYRALHDSLT DLPNRVALLD RLKCNLEQSR SDGLRTGVIF IDLDGFKIVN DSLGHLVGDD VLREVADRLR ASARPNDVVA RLAGDEFAIL CEQVSTIMEL ERAAHGVITA LAKPIALPEA DVTITASAGV AISGTGLANA DRLLNASDVA MYVAKRAGPG HCVAYQPAMR LDQATSPAR
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