Gene Franean1_4502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_4502 
Symbol 
ID5672851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp5371483 
End bp5373054 
Gene Length1572 bp 
Protein Length523 aa 
Translation table11 
GC content67% 
IMG OID641243367 
Productdiguanylate cyclase 
Protein accessionYP_001508783 
Protein GI158316275 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGCA TTTTCGCTGC CGGCGGCAAG ACAGGGCGCC TGATGATGTC CATGGACTGG 
TCCAACACAC CACTCGGGCC GCTCAGCGAC TGGGAAAAGT CACTGCGCAT GGCCGTGGGC
CTCTGCCTTG AGTCACACTT CCCGCTGGAG ATCCTGTGGG GCCCGGACCT GGTCGAGATA
CACAACGACG CCGTCATACC AATGCTCGGC CGCAAGCATC CGGGATGTAT AGGCCGGCCG
TTTCGGGACG TCTTTCCCGA GGCGGCGGAC CGGCTTGTCC CCATGCTTGA GCAGGTGATG
TCCGGCGGCG AAGCAACGTG GGAGGAGGAC TGGCCGTCCA GGCTCAACCG CCACGGCTAT
CTCGAGGACT GCTATTTCAC CTTCTCCTAC AGCCCGATCC GACGCCTTCC GGCGGGCGGT
GTGGCCGGCG TGTTCGCCGC GTTACAGGAG ACCACCCGGC AGGTACTCGG CACACGACGC
CTTCGATGCC TGCATGAGCT CGTCAGCGCC ACGGCCGGTC GGCCCACCCA GGCGGAGGTG
TTCGCCCAGG GCATCGAGGT GCTCGGTCGC TTCACCTCCG ACATCCCCTA CTGCCTCGTT
GTCCTCGAGG AGGCGCAGAC ACGGAAGCTC GCCGTGACGG CGTCGGCCGG TATCGCCGGA
GCCACGGGAA CCCCGTACGC GCTCGATCCC AGCGACGCCT CCGGACTCGG GGACTCGATG
GTTGCGGGAC GGACGCAGAT CGTCGCTCGT CTGCTGGACC GTCTCGCGTT ACGGCAGTCA
GGTGACACCC CACCGTCCAC CGCCGCGATG GTCGTCCCCC TCCCGGAGGG AGGCGACAGA
CGCCCTGTCG GACTTCTCAT CTTCGGGACA AGCGACCGGC TCCCTTTGAA CGCGGACTAC
CGGAGTTTCC TGAGTCTCGT GGCCACCCAG ATATCGGCGG CCAGCGTTGC GGCGCAGTCA
GCCGAGCGGG AACGCCTCCT TGCCGCTGAC GCGCATCATC GCGCCTTCCA TGACGCGCTG
ACCGAGTTGC CGAACAGAGC GGCCATGTTC GCCCACCTCG AACGCACGAT CACCGAAGCC
GGAAAAGGCC CGACACGAGC CGGCTTCCTT TTCGTTGATC TCGACGGATT CAAGCGGGTC
AACGACACGT TGGGTCATCT GGCGGGCGAC GATCTGCTCC GTGATGTCGC CGGGCGAATT
CACCGTGTGG TCCGCCCCGG TGACGTCGTG GCCCGGCTCG CCGGCGACGA GTTCGGAGTC
CTGTGCCGCA ACATCACGTC CTGCGGCGCG GTCGAAGCTG TCGCCGATCG CATCGTCGCC
AGCGTGGATC TGGCCATCGG CCGCCAGCAG GTCCCGGTCA CGGCCAGCGT CGGCATTGCG
ATGATCGGAC CCGGGGCCAC CAGCCCCGAG GATGTCGTAC ACGCCGCGGA TGCAGCCATG
TATCTCGCCA AGCGTCGAGG GCGGGGCTAC TGGCGGCACG CCGCGGAGGC GGAGGTGGCC
CGTCCCGACA CCGACACCGG CCCTCCCTCG GAGCCAGCCC GGCGTATGGC GGCCAAGCCG
CGCGACGGCT GA
 
Protein sequence
MTRIFAAGGK TGRLMMSMDW SNTPLGPLSD WEKSLRMAVG LCLESHFPLE ILWGPDLVEI 
HNDAVIPMLG RKHPGCIGRP FRDVFPEAAD RLVPMLEQVM SGGEATWEED WPSRLNRHGY
LEDCYFTFSY SPIRRLPAGG VAGVFAALQE TTRQVLGTRR LRCLHELVSA TAGRPTQAEV
FAQGIEVLGR FTSDIPYCLV VLEEAQTRKL AVTASAGIAG ATGTPYALDP SDASGLGDSM
VAGRTQIVAR LLDRLALRQS GDTPPSTAAM VVPLPEGGDR RPVGLLIFGT SDRLPLNADY
RSFLSLVATQ ISAASVAAQS AERERLLAAD AHHRAFHDAL TELPNRAAMF AHLERTITEA
GKGPTRAGFL FVDLDGFKRV NDTLGHLAGD DLLRDVAGRI HRVVRPGDVV ARLAGDEFGV
LCRNITSCGA VEAVADRIVA SVDLAIGRQQ VPVTASVGIA MIGPGATSPE DVVHAADAAM
YLAKRRGRGY WRHAAEAEVA RPDTDTGPPS EPARRMAAKP RDG