Gene Franean1_4480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_4480 
Symbol 
ID5672830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp5345640 
End bp5346557 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content65% 
IMG OID641243347 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001508763 
Protein GI158316255 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAGT TTCGTTTTGG CAACCGGGTT GCCCTGGTGA CCGGTGCGGG GGGCGGTCTC 
GGACTGCAGC ACGCGAAGCT CCTGGCGTCG CGCGGCGCCC GCGTGGTTGT CAATGACCTC
GGTGGAACCG TCGCTGGTCA GGATGCCGAC GGCGGCGCCG CCCACCGCGC CGCCGACGAG
ATCAAAGAAG CCGGCGGGGA AGCGGTGGCT GACACGCGCT CGGTATCCAC CCCGGACGGC
GCGGCCGCCA TGGTCCAGAC CGCACTCGAC ACGTTCGGCC GTATCGACAT CGTGGTCAAC
AACGCCGGAA TTCTCCGGGA CAGATCGCTG ACCAAACTCG AGCCGGCCGA CTTCGACGCC
GTGATCGACG TCCATCTGCG GGGTTCCTTC CTGGTCACCC AGGCAGCCTT TCCGCATCTG
CGTGAGCAGC GCTACGGCCG CATAGTGAAC ACGACATCGC CAGCCGGCCT GTACGGCAAC
TTCGGGCAGG CCAACTACTC GGCGGCGAAG GCCGGACTGA TCGGCCTCAC TCGGACGGTG
GCGGTCGAGG GAGCGAAGTA CGGTGTTTCC TGCAATGCCG TCTCACCGGC CGCGCTGACC
CGCATGACCG AAGAAATCAT GGGACAGCTC TTCGTCGACC CGGACGGAGC TGCCCGCCTC
GACGCGGCCA AGGTCTCTCC GGTTGTGGCC TGGCTGTGTC ACGAGCAGTG CGCACTGACC
GGTCAGGTCT TCGGTGTGGC CGGTGGACTG GTCACCAAGA TAATCATCGC GGAGACCCGT
GGCTTCTTCG ATCCGGACCT GACCATCGAG ACGGTGGCGG AACGTGTCGA TGCTATCCAG
AACATGGCGG ACCTCGCGGT TCCGGGCAGC GTCGGCGACA GTATGTCCCT GCTCTTCGAT
CATTACGCCA AACCTTGA
 
Protein sequence
MAEFRFGNRV ALVTGAGGGL GLQHAKLLAS RGARVVVNDL GGTVAGQDAD GGAAHRAADE 
IKEAGGEAVA DTRSVSTPDG AAAMVQTALD TFGRIDIVVN NAGILRDRSL TKLEPADFDA
VIDVHLRGSF LVTQAAFPHL REQRYGRIVN TTSPAGLYGN FGQANYSAAK AGLIGLTRTV
AVEGAKYGVS CNAVSPAALT RMTEEIMGQL FVDPDGAARL DAAKVSPVVA WLCHEQCALT
GQVFGVAGGL VTKIIIAETR GFFDPDLTIE TVAERVDAIQ NMADLAVPGS VGDSMSLLFD
HYAKP