| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4444 |
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| Symbol | |
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| ID | 5672796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 5308711 |
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| End bp | 5310381 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641243313 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001508729 |
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| Protein GI | 158316221 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGGCC GGGACAGCGC AGAGCTTCTT GGCACCACGT GGACGGCTCC TGACGTCCGG
TTCAGCGGTG GGAACTGGCG GGAGCTGGGT TCCTTACTGG GCTGCGGCAG CCCGGTGTCG
CGTCGTTTGA TACGGCTCGT GCGCCCTGGT GGGAGTGTCA TTTACCTGCT GGTCAGCGCG
AGCGTGACGG ACGAGGTGGA ATGCGGCGGG CTGACGGAGC GGTGCTGCCT TGGTCAGCTT
ATCGACGTGA CCGTCGGGCA GACCGCGCGT GAACAACTCG CGCGGATTCT GGAAGACAGC
CCAGTCTCCA CGGCACTTGT CAACCGGGCC GGGCGAATAG CCGTCCTCGG GGGAGGCGTT
ATTCCAGGAA TGGCCGAGGA TCTCAAGGCA GCCGAGCATA AATCCGTGTT CGAAGTATTC
AGCTACCTGC CGGATGCGAC CGCGATGATC CGGCGCGCCA TGGCGGGAGA GCCGAGCATC
GGGCTGATGC AGGCGTTTGG CCGTTGGATC GACCTGCACA TACGCCCGGC TCTCGCCGAG
TCCGGCGAGG TCGACTGCAT CGCCGCCATC GCCATCGACG TCACGGAACG CGAACAGGCC
CAGGCGGACC AGCGCCTGCT GGCGGATCTT GCCGGCCAGG CGTTGCGCAG CATTGCACCG
GAGGAGCTCT GGGATGAGGC CGCGCAGGTG GTCGCCCGCC GCTTCGACGC CATGGTCGCC
GTGCACGTCG TCGTTCCCGA CCGCGAGCTC CGCCTGGCTG CCATGGCCGG ACCGGCGCCG
CTCCCCGCGG TGGCCGTGAA GCTGTGGGAG AGCGCCAGGT CCGTTCTCGG CCCTCGGACC
GTCGGGCCTG AAGGGAGGCC GCGGGAGAGG GACGATCCCG GCGAGGGGCG CGGCAAGCCC
GTCGCGACCG CCACCGCCAC CGCGGGCGGG GCTGGACGTG GCGTCCACCT GCTGTCGGTG
CCGCTGGGCC AGCCCAGCGC GCCGAGTGCC GTGCTCACCC TGTACCGCGG GGACCAGCCG
GCGGCCTCGA CCCGCGGCCG GGCTGACGAA CGGACTGTCG GAAAGTCCGC GACGGGGCCG
TGGTCGACGC AGGAGCGGGA GTTCGCCGAC GCGGTTGCCG GTGTGCTTGG CGCGGCGGCG
GTGCGGTTCG CGATGGAACG GCTGGCCCGC TACCGGGCCT CGCACGACGA GCTGACGGAC
CTGCCGAACC GGGCCGCCCT CTTCGAGCGG TTATACGATG ACCTCCGACA CGGATTCGAC
GAGGGTGTGC AGACCGGGGT GATCTTCATC GACCTGGACA ACTTCAAAAC GATTAATGAT
TCTCGCGGTC ATCTGGCTGG CGATGAGGTG CTCCGGCAGG TTGCCCGCCG GCTTCGGGCC
GCGGTTCGCG CGAGCGATGT GGTGGCGCGG CTCGCCGGCG ACGAGTTCGC CGTCGTCTGT
CCGCGGGTGA CCGGCGCGAC CGAGGTCGAA CGGGTGGCAC GTCGGGTGCT GGCGAGCCTC
GACGGACCGA TCGCCCTGCA CGGCGGGCGG GTGAACGTGA CCGCCAGCGC CGGTGTCGCG
GTGTCGGGAT GCGACCTCAC CGATGCCGAC CGTCTGCTGA ACGCCGCCGA CATCGCCATG
TACACCGCGA AGCGGGCAGG CCCGGGTCGG TGCTTCGTCC AACATGGCTG A
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| Protein sequence | MLGRDSAELL GTTWTAPDVR FSGGNWRELG SLLGCGSPVS RRLIRLVRPG GSVIYLLVSA
SVTDEVECGG LTERCCLGQL IDVTVGQTAR EQLARILEDS PVSTALVNRA GRIAVLGGGV
IPGMAEDLKA AEHKSVFEVF SYLPDATAMI RRAMAGEPSI GLMQAFGRWI DLHIRPALAE
SGEVDCIAAI AIDVTEREQA QADQRLLADL AGQALRSIAP EELWDEAAQV VARRFDAMVA
VHVVVPDREL RLAAMAGPAP LPAVAVKLWE SARSVLGPRT VGPEGRPRER DDPGEGRGKP
VATATATAGG AGRGVHLLSV PLGQPSAPSA VLTLYRGDQP AASTRGRADE RTVGKSATGP
WSTQEREFAD AVAGVLGAAA VRFAMERLAR YRASHDELTD LPNRAALFER LYDDLRHGFD
EGVQTGVIFI DLDNFKTIND SRGHLAGDEV LRQVARRLRA AVRASDVVAR LAGDEFAVVC
PRVTGATEVE RVARRVLASL DGPIALHGGR VNVTASAGVA VSGCDLTDAD RLLNAADIAM
YTAKRAGPGR CFVQHG
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