Gene Franean1_4439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_4439 
Symbol 
ID5672791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp5305136 
End bp5305888 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content67% 
IMG OID641243308 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001508724 
Protein GI158316216 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGCTA CCGGAGACCT CGAAGGCAAG GTCGCGATCG TGACCGGTGC CGCCAACGGG 
ATCGGCGTCG CGATCGCGAC GCGGTTCGTC ACCGAAGGCG CCAAGGTCGT CATCGCCGAC
ATCGACGCCG GTGGTCAGGG CGTCGCCGCG GAGCTTGGTG AGCGCGCCAC TTTCTTCAGC
ACTGACGTCT CCGACCCCGT TCAGACTCAG GCACTCGTCG ACTTCACGAT CAGGCACTTC
GGCGGACTTC ACGTGCTGTG CAACAACGCC GGTGTGTCCG GTGGGCTGCG GCGATTCCTC
GACGACGACC TGCGCGACTT CGAACGTGTA GTGGCCGTCG ACCTATACGG GGTCATGGCC
TGCAGCCGCA GCGCCGCCCG GCACATGGTC GATCACGGCG GCGGCGCCAT CGTCAACATT
GCCTCAGGAG CCGGGATCAC CCCCGGAATC GGGATGCTGC CCTATCGGGC AGCAAAGGCC
GGCGTCGTCC AGTTCACCCG GTGCCTGGCG GTGGAGGTGG GCGAGCACGG CATCAGGGCC
AACTGCATCG CCCCCGCCAA CATCTCCACA GACATCAACG CCGCATTCGA CAAGGCCACC
GTCATCCGCC TGCAGCCGTT GCCGCACCAG GGCAGGACCG GCGACATCGC CGAGGCCGCG
CTTTACCTCG CCAGCGACCG CGCCGCCCAC GTCACCGGCC TGGTCCTCGC TGTCGACGGT
GGTATGTCCC TCGGGACACC ACCACGTCGC TGA
 
Protein sequence
MTATGDLEGK VAIVTGAANG IGVAIATRFV TEGAKVVIAD IDAGGQGVAA ELGERATFFS 
TDVSDPVQTQ ALVDFTIRHF GGLHVLCNNA GVSGGLRRFL DDDLRDFERV VAVDLYGVMA
CSRSAARHMV DHGGGAIVNI ASGAGITPGI GMLPYRAAKA GVVQFTRCLA VEVGEHGIRA
NCIAPANIST DINAAFDKAT VIRLQPLPHQ GRTGDIAEAA LYLASDRAAH VTGLVLAVDG
GMSLGTPPRR