| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4379 |
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| Symbol | |
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| ID | 5672732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 5225702 |
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| End bp | 5226904 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641243248 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001508665 |
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| Protein GI | 158316157 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.222017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCGGT CTTTCCGCGG ACATGAAGAT GCGCCGCCCA CGGATCTGAG CGCCCCCGAC
GAAGCCGCGG AGGAAAAGAT CCGATCCCTC ATCGCCCGGG GTAAGGAGAA CGGTTTCGTC
ACCCCGGACG ACATTGCCGC TGCGCTACTC GCAGCGGAGC TGCCGCCAGA GAGCAGCGAC
GTTGTCCTAC GGCTACTCGC GGAGGACGGC ATCGAGGTCC TCGACGAGGT GGGCGGGGAC
GCTTCAGACA TGCCTAGCCG GCGTCGTGAG GGAGAGGAAC TTGCGCTTAC GACGCCACCC
TCGGACCCGG TACGGATGTA TCTCAAGGCC ATCGGCCGGG TGCGGCTGCT GACCGCAGAG
GAAGAGGTCG ACCTAGCGAA GCGGATCGAG GCGGGTCTGT TCGCCTCCGA GAAGCTCGCC
GCCATCCGAA GGACCTCCCC GCGGCTGCGT CGGGACTTGG AGGCGATCGA GCAGGACGGT
CAGATCGCCA AGCGCAAACT GGTGGAGGCG AACCTGCGCC TCGTGGTGTC CATCGCTAAG
CGGTACGTCG GCCGGGGCAT GCTGCTGCTG GACCTGATCC AGGAGGGCAA CCTGGGCCTG
ATCCGTGCGG TGGAGAAGTT CGACTACACC AAGGGATACA AGTTCTCCAC CTACGCCACC
TGGTGGATCC GGCAGGCTGT CACGAGGGCC ATCGCGGATC AGGGGCGCAC CATCCGGATT
CCGGTACACA TGGTCGAGAC AATCAACAAG GTCACCCGGA TCCAGCGGCA ACTATTGCAG
GATCTGGGCC GGGAGCCTTC GCCGGAAGAG ATCGCCACAC AGGTAGACCT CGCACCGCAC
AGAGTGGAGG AAATTCTCAA AGTCGGACAG ACACCGGTCG CCCTGGAGAC CCCGATCGGC
GAGGAGCAGG ACTCCCAGCT CGGAGACTTC ATCGAGGACA ACGACGCGAT TGTGCCGTTC
GAAGCGGCAA GTTTCGTCCT CCTGCAGGAG CAAATCGACT CGGTCCTACA CACGCTGTCC
GAGCGGGAGA AGAAAGTCAT CCAGCTCCGG TTCGGTCTGA CTGACGGCCA GCCTAGGACG
TTGGAGCAGG TAGGCCGGGA ATTCGGGGTG ACCCGGGAAC GGATCCGGCA GATAGAATCA
AGAACACTGG CGAAGCTAAG CCACCCGGCG CGTTCACAAC GGCTACGCGA CTACCTGGTA
TAG
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| Protein sequence | MGRSFRGHED APPTDLSAPD EAAEEKIRSL IARGKENGFV TPDDIAAALL AAELPPESSD
VVLRLLAEDG IEVLDEVGGD ASDMPSRRRE GEELALTTPP SDPVRMYLKA IGRVRLLTAE
EEVDLAKRIE AGLFASEKLA AIRRTSPRLR RDLEAIEQDG QIAKRKLVEA NLRLVVSIAK
RYVGRGMLLL DLIQEGNLGL IRAVEKFDYT KGYKFSTYAT WWIRQAVTRA IADQGRTIRI
PVHMVETINK VTRIQRQLLQ DLGREPSPEE IATQVDLAPH RVEEILKVGQ TPVALETPIG
EEQDSQLGDF IEDNDAIVPF EAASFVLLQE QIDSVLHTLS EREKKVIQLR FGLTDGQPRT
LEQVGREFGV TRERIRQIES RTLAKLSHPA RSQRLRDYLV
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