Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_4274 |
Symbol | |
ID | 5672629 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 5108256 |
End bp | 5110475 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641243147 |
Product | isocitrate dehydrogenase, NADP-dependent |
Protein accession | YP_001508564 |
Protein GI | 158316056 |
COG category | [C] Energy production and conversion |
COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.876075 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.344018 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACTGATT CGGTGATCAT CTACACCCAG ACGGACGAGG CGCCGGCGCT GGCGACGTAC TCGTTCCTGC CGGTGGTGCA GGCGTACGCG TCGACGGCCG GGGTCGGCGT TGTCAGCCGC GACATTTCCC TGGCCGGGCG GATCATCGCC AGCTTCCCGG AGCACCTCGA GCCGTCCCAG CGCATCGACG ACGCGCTCGC CGAGCTCGGC GACCTGGCCC GCACGCCTGA GGCGAACATC ATCAAGCTGC CGAACATCTC GGCGTCCATC CCGCAGCTGC GGGCCGCCGT CGTCGAGCTG CAGAAGCAGG GCTACGCGCT GCCGGACTAC CCCGACGACC CGAAGACCGA CGAGGAGCGG GAGATCCGCG CCCGTTACGA CAAGGTCAAG GGCAGCGCCG TCAACCCCGT GCTGCGCGAG GGCAACTCCG ACCGCCGCGC GCCGGCGTCG GTGAAGAGCT ACGCCAAGGC CCACCCGCAC CGCATGGGCG CCTGGAGCGT CGAGTCGAAG ACGAACGTCG CCACCATGAG CGCCGACGAC TTCCGTTCGA CCGAGAAGTC CGCGGTGATC GCCGCGGACG GCTCCCTGCG TATCGAGCTG GTCGGCGACG ACGGCACCAC GTCCGTCCTG CGCGAGTCGG TACCGGTGCT CGCCAGCGAA GTCGTCGACG TCTCGGTCAT GCGGGTCGGC GCGCTGCGCG AGTTCCTCAC CGAGCAGGTG GCCCGGGCGA AGGCCGAGGG CGTGCTGTTC TCGGTGCACC TGAAGGCCAC GATGATGAAG GTCTCCGACC CGATCATCTT CGGCCACGTC GTGCGTGCGT TCTTCCCCGA GACGTTCGCC CGCCACGGCG CGGCGCTCGC GGCGGCCGGC CTGACCCCGA ACGAGGGCCT CGGCGGCATC TTCAAGGGGC TGGAGGCGCT GCCCGAGGGC GCCGAGATCA AGGCCTCCTT CGAGGCCGAG CTCGCCGCCG GGCCGCCGCT GGCCATGGTC GACTCCGACC GGGGCATCAC GAACCTGCAC GTGCCCAGCG ACGTCATCGT CGACGCGTCC ATGCCGGCGA TGATCCGCAC CTCCGGCCAC ATGTGGGGGC CGGACGGTGC CGAGGCGGAC ACCCTCGCCG TCCTGCCCGA CAGCAGCTAC GCCGGCATCT ACCAGGCCGT CATCGACGAC TGCCGCGCGC ACGGCGCCTA CGACCCGGCG ACGATGGGCT CGGTGCCCAA CGTCGGCCTG ATGGCGCAGA AGGCCGAGGA GTACGGCAGC CACGACAAGA CCTTCGAGAT CCCGACGACC GGCACCGTGC GGCTCGTCGA CGGAGCGGGC ACGGCGGTCC TCGAGCTGAC CGTGAGCGCG GGTGACATCT TCCGCGCCTG CCAGACCAAG GACGCCCCGA TCCGCGACTG GGTGAAGCTC GCCGTCACCC GGGCCTGCGC CACCGGCAAC CCGGCCGTGT TCTGGCTTGA CGAGACCCGC GCGCACGACG CCCAGCTCAT CACCAAGGTC CGGACCTACC TGGCCGACCA CGACACCACC GGGCTGCAGA TCGAGATCAA GGCCCCGGTC GACGCGATCA CCTTCTCGCT GGAGCGGATC CGCCGCGGCG AGGACACCAT CTCGGTGACC GGCAACGTGC TGCGTGACTA CCTGACCGAC CTGTTCCCGA TCCTGGAGCT CGGCACGAGC GCAAAGATGC TCTCGGTCGT CCCGCTGATG AACGGCGGCG GCCTGTTCGA GACCGGTGCC GGCGGGTCGG CGCCCAAGCA CGTCCAGCAG CTCGTCAAGG AGAACTACCT GCGCTGGGAC AGCCTGGGTG AGTTCCTGGC GCTGGCGGTG AGCTTCGAGC ACCTCGCGCA GCGCACCGGC AACGCCCGCG CCCAGGTGCT GGCCGACACC CTCGACCGGG CGACCGCGAC CTTCCTCAAC GAGGACAAGT CGCCCACCCG CCGGGTCGGC GGCATCGACA ACCGGGGCAG CCACTTCTAC CTGGCCCTGT ACTGGGCCCA GGAACTCGCG GCGCAGACCG ACGACGCCGC GCTCGCGCAG GCGTTCACCA GCCTGGCCGA GAGCCTCGCG GCCCAGGAGA AGACCATCGT CGACGAGCTG CTCGCCGTGC AGGGCTCGCC GGCCGACATC GGCGGCTACT ACCAGCCCGA CCCGGCCAAG GCCGCGGCCG TGATGCGCCC GTCGAAGACC TTCAACGAGG CCATCGCGAC GCTTGCCTGA
|
Protein sequence | MTDSVIIYTQ TDEAPALATY SFLPVVQAYA STAGVGVVSR DISLAGRIIA SFPEHLEPSQ RIDDALAELG DLARTPEANI IKLPNISASI PQLRAAVVEL QKQGYALPDY PDDPKTDEER EIRARYDKVK GSAVNPVLRE GNSDRRAPAS VKSYAKAHPH RMGAWSVESK TNVATMSADD FRSTEKSAVI AADGSLRIEL VGDDGTTSVL RESVPVLASE VVDVSVMRVG ALREFLTEQV ARAKAEGVLF SVHLKATMMK VSDPIIFGHV VRAFFPETFA RHGAALAAAG LTPNEGLGGI FKGLEALPEG AEIKASFEAE LAAGPPLAMV DSDRGITNLH VPSDVIVDAS MPAMIRTSGH MWGPDGAEAD TLAVLPDSSY AGIYQAVIDD CRAHGAYDPA TMGSVPNVGL MAQKAEEYGS HDKTFEIPTT GTVRLVDGAG TAVLELTVSA GDIFRACQTK DAPIRDWVKL AVTRACATGN PAVFWLDETR AHDAQLITKV RTYLADHDTT GLQIEIKAPV DAITFSLERI RRGEDTISVT GNVLRDYLTD LFPILELGTS AKMLSVVPLM NGGGLFETGA GGSAPKHVQQ LVKENYLRWD SLGEFLALAV SFEHLAQRTG NARAQVLADT LDRATATFLN EDKSPTRRVG GIDNRGSHFY LALYWAQELA AQTDDAALAQ AFTSLAESLA AQEKTIVDEL LAVQGSPADI GGYYQPDPAK AAAVMRPSKT FNEAIATLA
|
| |