| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4202 |
|---|
| Symbol | |
|---|
| ID | 5672557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5004146 |
|---|
| End bp | 5005735 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641243075 |
|---|
| Product | ferredoxin-dependent glutamate synthase |
|---|
| Protein accession | YP_001508492 |
|---|
| Protein GI | 158315984 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.359651 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.965318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCGC TCGTCACCGT GCTGGTCCTG GCCGTGCTGA CGGCAGTGGC GGTCGGTGCG
GCGCTGCTGG CCGCGGCCGG CTGGTGGGCC GCCGCCGCGG TGGCCGGCGC GCTGCTGGCC
GTGGCCGTGC ACGACGTCGT CCAGCGCCAG CACGCCATCC TGCGCTACCA CCCGGTGCTC
GGGCATGCCC GGTTCCTGCT CGAGACCATC CGTCCGGAGA TCCAGCAGTA CTTCGTCGAG
CGCAACTACG ACGGCCGCCC GTTCGACCGT GCCACCCGGA CGATGATCTA CCAGCGGGCC
AAGGGCACCC ATGGGGACCA GGCCTTCGGT ACCGAGCGCG ACGTCAACGA GGTCGGCTAC
GAGTACCTCC CGCACTCCAC GGCGCCCGCG CCGGTCGCCC CCGGCTCCGC GCCGCCGCGG
GTGCGCATCG GCGGGCCGGA CTGCACCCAG CCCTACGACA TGGCGCTGCT CAACGTCTCG
GCGATGAGCT TCGGGTCGCT GTCGGCCAAC GCGGTGCTGG CGATGAACCG TGGCGCCGCG
GCCGGCGGCT TCGCGCACGA CACCGGCGAG GGCGGGCTCA CCGAGTACCA CCTGCGCCAC
GGCGCCGACC TGGTCTGGGA GATCGGCAGC GGCTACTTCG GCACCCGCAC CCCCGACGGT
GACTTCGACC CGGCCCGCTT CAAGGACGTC GCCGCGCTGC CCACGGTGCG GATGGTCGAG
CTCAAGCTGA GCCAGGGCGC CAAGCCCGGC CTCGGCGGCG TGCTGCCGGC GGCGAAGGTC
ACCGCGTCGA TCGCCCGGGC CCGCGGGGTC CCCGAGGGGG TCGCGTGCAT CAGCCCGTCG
TTCCACCGGG TCTTCGCCAC CCCGCGCGAG CTCGTCCTGT TCGTCGGGCG GATGCGCGAG
CTCGCCGGCG GCAAACCGGC CGGGTTCAAA CTGTGCGTCG GGTCGCGCCG CGAGCTGCTC
GCGATCTGCC GGGCGATGGT GGAGGAGGGG ATCACCCCGG ACTTCATCGT GGTGGACGGC
TCGGAGGGCG GCACCGGCGC GGCGCCGCTG GAGTACGAGG ACCACGTGGG CACCCCGCTG
ACGGAGGGCC TGATCACCGT GCACAACGCG CTGGTCGGGG TGGGCCTGCG CGACCGGGTC
CGGATCGGGG CCGCCGGCAA GGTCGCCAGC GGGGTGGACG TCGTCAAGCG GCTCGCGCAG
GGCGCGGACT ACACGAACGC GGCCCGGGCG ATGATGATGG CGGTCGGCTG CATCCAGGCC
CAGCGCTGCC ACACCAACAC CTGCCCGGTG GGGGTCGCCA CCCAGGACCC GCGCCGCGCC
CGCGCCCTCG ACGTCACCGA CAAGAGCGAA CGGGTCCGCC GCTACCAGGC GGCGACCGTC
GCCCAGGCGG TGCAGGTGAT GGCCTCGCTT GGCTGCACCG GGCCCGAGCA GCTCCACCCG
GGGATGCTCA TGCGCCGCGT CACCCACACC GACACCCGCA GCTACGCCGA GCTGTACGAG
TGGCTCGAAC CCGGTGAGCT GCTCGCCGAG GCGCCGCGTT CGTGGGCGGC CGACTGGGCC
GCCGCCGACC CCGACAGCTT CCGTCCCTGA
|
|---|
| Protein sequence | MLPLVTVLVL AVLTAVAVGA ALLAAAGWWA AAAVAGALLA VAVHDVVQRQ HAILRYHPVL
GHARFLLETI RPEIQQYFVE RNYDGRPFDR ATRTMIYQRA KGTHGDQAFG TERDVNEVGY
EYLPHSTAPA PVAPGSAPPR VRIGGPDCTQ PYDMALLNVS AMSFGSLSAN AVLAMNRGAA
AGGFAHDTGE GGLTEYHLRH GADLVWEIGS GYFGTRTPDG DFDPARFKDV AALPTVRMVE
LKLSQGAKPG LGGVLPAAKV TASIARARGV PEGVACISPS FHRVFATPRE LVLFVGRMRE
LAGGKPAGFK LCVGSRRELL AICRAMVEEG ITPDFIVVDG SEGGTGAAPL EYEDHVGTPL
TEGLITVHNA LVGVGLRDRV RIGAAGKVAS GVDVVKRLAQ GADYTNAARA MMMAVGCIQA
QRCHTNTCPV GVATQDPRRA RALDVTDKSE RVRRYQAATV AQAVQVMASL GCTGPEQLHP
GMLMRRVTHT DTRSYAELYE WLEPGELLAE APRSWAADWA AADPDSFRP
|
|---|
| |