| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4179 |
|---|
| Symbol | |
|---|
| ID | 5672534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4967846 |
|---|
| End bp | 4970233 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641243052 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001508469 |
|---|
| Protein GI | 158315961 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0706824 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.286625 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG CCACGAGGAC GGACCCGCAG CCGCCCGCGC CCCACCTCGC CGACAGCCAC
GACCTCATCC GCGTCCACGG CGCCCGCGTG AACAACCTCA AAGACCTCAG CGTCGAACTC
CCCAAACGCC GACTCACCGT GTTCACCGGC GTCTCCGGCT CAGGCAAAAG CTCCCTGGTC
TTCGGCACCA TCGCCGCGGA ATCCCAGCGA CTGATCAACG AAACCTACAG CGCCTTCGTC
CAAGGCTTCA TGCCCACCCT CGCACGACCC GAAGTCGACG TCCTCGACGG ACTCACCACC
GCGATCATCG TCGACCAGCA GCGGCTCGGC GCCGACCCCC GCTCCACCGT CGGCACCGCC
ACCGACGCCA ACGCCATGCT GCGCATCCTG TTCAGCCGGC TGGGACGTCC ACACATCGGC
TCACCCAACG CCTTCTCCTT CAACGTCCCC ACCGTCCGGG CAAGCGGCGC GATCACCACC
GAACGCGGAA CCAGCAAAAC CGAACGAAAG ACCTTCACCC GCACCGGCGG CATGTGCCCC
CGCTGCGAAG GCCGCGGCGC CGTCTCCGGC TTCGACCTCA CCGCCCTCTA CGACGACAGC
AAATCCCTCA ACGAAGGCGC CCTAACCATC CCCGGCTACA GCGTCGACGG CTGGTACGGC
CGCATCTTCG GCGGCTCCGG CTTCCTCGAC CCCGACAAAC CCATCCGCCG ATACACCAGG
ACCGAACTCC ACGACCTGCT CTACAAAGAA CCCACCAAAA TCAAGGTCGA CAACGTCAAC
CTCACCTACG AAGGCCTCAT CCCGAAAATC CAGAAATCGA TCCTGTCCAA AGACCGCGAA
GCGATGCAGC CACACATCCG CGCCTTCGTC GACCGGGCCG TCACCTTCAC CACCTGCCCC
GACTGCGACG GCACCCGGCT CAGCGAAGCC GCCCGCTCCT CCCGCATCGC CGGCACCAAC
ATCGCCGATG CCTGCGCCAT GCAGATCAGC GACCTCGCCC ACTGGGTCCG CGACCTCGAC
GAACCATCCG TCGCACCCCT GCTCACCGCG CTGCACCACA CCCTCGGCTC CTTCGTCGAG
ATCGGCCTGG GCTACCTCTC CCTCAACCGG CCCTCCGGCA CCCTCTCCGG CGGCGAGGCG
CAGCGCGTCA AAATGATCCG CCACCTCGGC TCCTCACTCA CCGACACCAC CTACGTCTTC
GACGAACCCA CCGTCGGCCT GCATCCCCAC GACATCCAGC GCATGAACAA CCTGCTGCTG
CGACTGCGAG ACAAGGGCAA CACAGTGCTC GTCGTCGAAC ACAAGCCGGA AACAATCGCC
ATCGCCGACC ACGTCGTCGA CCTCGGGCCC GGCGCCGGCA CCGCCGGCGG CACCGTCTGC
TACGAAGGCA CCCTCGCCGG GCTACGAACC AGCGGCACTC TCACCGGCCG CCACCTCGAC
GACCGCGCCA CCCTCAAACC GACCGTGCGC ACCCCCACCG GCCAGCTCCC GATCCGCGGC
GCGACCACCC ACAACCTGCA CGACGTCAAC GTCGACATCC CCCTCGGCGT ACTCGTCGTC
GTCACCGGCG TCGCCGGCTC CGGCAAAAGC TCCCTCATCC ACGGATCGAT CCCCGCCGGC
GCGGACGTCG TCTCGATCGA CCAGACCGCC ATCCGCGGCT CACGACGCAG CAACCCCGCC
ACCTACACCG GACTGCTCGA CCCGATCCGC AAGGCATTCG CGAAAGCCAA CGGTGTCAAG
CCCGCACTGT TCAGCGCCAA CTCCGAAGGC GCCTGCCCCG CCTGCAACGG CGCTGGCGTC
ATCTACACCG ACCTGGCGAT GATGGCCGGC GTCGCCAGCA CCTGCGAAGA ATGCGACGGC
AAACGGTTCG AAGCCTCCGT GCTCAACCAC CACCTCGGCG GCCGCGACAT CAGCGAAGTC
CTCGCCATGT CCGTCACCGA CGCCCAGGAG TTCTTCGGCA CCGGCGAGGC ACGCACACCC
GCCGCACACA CCATCCTCAA CCGGCTCGCC GACGTCGGAC TCGGCTACCT CACCATCGGC
CAGCCACTCA CCACCCTCTC CGGCGGCGAA CGGCAACGAC TCAAACTCGC CACCCACATG
GCCGACAGGG GCGCCACCTA CATCCTCGAC GAACCCACCA CCGGCCTGCA CCTCGCCGAC
GTCGAACAAC TCCTCGGCCT ACTCGACCGG CTCGTCGACT CCGGCAAGTC CGTCATCGTC
ATCGAACACC ACCAGGCCGT CATGGCCCAC GCCGACTGGA TCATCGACCT CGGCCCCGGC
GCCGGTCACG ACGGCGGCCG GATCGTCTTC GAAGGCACAC CCGCCGACCT CGTCGCCGCC
CGTTCCACCC TCACCGGCGA ACACCTCGCC GCCTACATCG GCACCTGA
|
|---|
| Protein sequence | MSNATRTDPQ PPAPHLADSH DLIRVHGARV NNLKDLSVEL PKRRLTVFTG VSGSGKSSLV
FGTIAAESQR LINETYSAFV QGFMPTLARP EVDVLDGLTT AIIVDQQRLG ADPRSTVGTA
TDANAMLRIL FSRLGRPHIG SPNAFSFNVP TVRASGAITT ERGTSKTERK TFTRTGGMCP
RCEGRGAVSG FDLTALYDDS KSLNEGALTI PGYSVDGWYG RIFGGSGFLD PDKPIRRYTR
TELHDLLYKE PTKIKVDNVN LTYEGLIPKI QKSILSKDRE AMQPHIRAFV DRAVTFTTCP
DCDGTRLSEA ARSSRIAGTN IADACAMQIS DLAHWVRDLD EPSVAPLLTA LHHTLGSFVE
IGLGYLSLNR PSGTLSGGEA QRVKMIRHLG SSLTDTTYVF DEPTVGLHPH DIQRMNNLLL
RLRDKGNTVL VVEHKPETIA IADHVVDLGP GAGTAGGTVC YEGTLAGLRT SGTLTGRHLD
DRATLKPTVR TPTGQLPIRG ATTHNLHDVN VDIPLGVLVV VTGVAGSGKS SLIHGSIPAG
ADVVSIDQTA IRGSRRSNPA TYTGLLDPIR KAFAKANGVK PALFSANSEG ACPACNGAGV
IYTDLAMMAG VASTCEECDG KRFEASVLNH HLGGRDISEV LAMSVTDAQE FFGTGEARTP
AAHTILNRLA DVGLGYLTIG QPLTTLSGGE RQRLKLATHM ADRGATYILD EPTTGLHLAD
VEQLLGLLDR LVDSGKSVIV IEHHQAVMAH ADWIIDLGPG AGHDGGRIVF EGTPADLVAA
RSTLTGEHLA AYIGT
|
|---|
| |