| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4162 |
|---|
| Symbol | |
|---|
| ID | 5672517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4944196 |
|---|
| End bp | 4947072 |
|---|
| Gene Length | 2877 bp |
|---|
| Protein Length | 958 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641243035 |
|---|
| Product | precorrin-4 C11-methyltransferase |
|---|
| Protein accession | YP_001508452 |
|---|
| Protein GI | 158315944 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1010] Precorrin-3B methylase
[COG2073] Cobalamin biosynthesis protein CbiG
[COG2875] Precorrin-4 methylase |
|---|
| TIGRFAM ID | [TIGR01465] precorrin-4 C11-methyltransferase
[TIGR01466] precorrin-3B C17-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.329616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.542159 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACC CCGGCCGCGG CACCGGTCAG CCAGTGGACG GCGCCGGGCC GGGACGCGGG
CGGGTCAGTT TCGTCGGTGC CGGGCCGGGT GCCGCCGATC TGATCACCGT GCGCGGCGCG
GCGGTTCTCG CCGCCGCCGA CGTGGTGATC TGGGCGTCCT CGCTGGTGCA CCCCGCCATC
CTCGGCCATG CCCGTGACGG CGCCGAACTG ATCGACTCCG CGGCGTTGCC GTTGGAGGGC
GTCGAGGCGG TCTACCGCCG TGCCGCCGAG CAGGGTCTGC ACGTCGCCCG GGTCCACTCG
GGGGATCCGG CGCTGTGGGG GGCGGTGCAG GAGCAGCTGG AGATCTGCGA CCGGCTCGGC
CTGGACAGCG ACATCGTGCC CGGGGTGAGC AGCTTCACCG CGCTCGCCGC GGCGTTGCGC
CGGGAGCTGA CCGTCCCCGA GGTCGCCCAG TCGGTGATCC TGACCCGGCT CGGGGGTGGG
AAGACCCCGA TGCCACCCGG GGAGGAGGTC CGCGACCTCG CCCGGCACGG CACGACGATG
GCGCTGTTCC TGTCCGCGGC CCGTTCCGGG CAGCTGCGGG AGGAGCTGCT CGCCGGCGGC
TACCCGCCGG ACACGCCCTG TGTCGTCGCC TACCAGGTGA GCTGGCCGGA CGAGCTGATC
GTGCGCGCCA CCCTCGACAC GCTCGCCGAC ACGGTCAAGG CGCACCGGCT GTGGAAGCAC
ACCCTGGTGC TCGTCGGCCC GGCGCTGGTG GCCGGGGGGC GACGCTCCCA CCTGTACCAC
CCGGGGCATT TCCACACCTA CCGGCGGGCG CAGTCCGGTG CGCGCACGGT GCTGCGCGAC
GCCGACCGGG AGCTGGCCGC CGCCGGCGCC ACCCAGCTCC CCGCCAGCCC ACACCCCGTC
GCCCCGGCCC CGGCCGTGCT GGAACGGGAG CGGGGGGCGC CGGCCGAGCC GGTGGCACCG
CAGGGCGCGG CGGTGGACGG CGCGGGCCTG GTGGCGCTGG TGGCGGTGAC CGCCGCCGGG
CGGGCCGCGG CCGGTGACCT CACCCGCCGC TGGCCCACCG CCCGGCTCTA CCCGGGCCGG
CCCCGCGACG CGATCACCGC CGCGCTCGCG GACGGCGTCA CGGGCATTGT CTGTTTCCTG
GCGACGGGGG CGACGGTCCG CCTCCTCGAC GGGCTGCTGC GCGGCAAGGA CCACGACCCG
GGTGTGGTGT GTGTGGACGA GGCGCGCCGG TTCGCGGTCG CGTTGTGCGG TGGGCACGCC
GGTGGCGCGA ACCGGCTCGC CGAGCAGGTC GCCGACGCCC TCGGCGCCAC ACCGGTGATC
ACCACGGCCA GTGACGCCAT CGGGGTGAGC GCCCTGGACG GGTTCGGCGC CGAGCTCGGG
TTCACTGTCG AACCGGGTTC GGAGCTGGCC GCCGTCGGCA CGGCCGTCCT GTCGGGTCAT
CCCGTCGCCC TGCACGCCGA CGCGGTGTGG CCGCTGCCGC CGCTGCCCCC GTCCGTCACC
ACCACTATCA CCGGCACCGG CGCTGTTGAT GGTGGGGCGG TGGGCGTGGA CGGGACGGCG
GTGGCGTCGA TTCATGTCAC CGACCGGCTG CTGGGTGCGC CGCCGGACGG GGCCGGCCCG
CGGGTGGTCT ACCGGCCCCC GAGCCTGGTC GTCGGGGTCG GGGCGAGCCG CGGCGCGCCC
GCCGACGAGA TCGACGTGCT CATCGACACC GCGCTGGCCG GCGCCGGGCT GTCCCCGCTG
GCGGTGACCC ATCTGGCGTC GGTGACCGCG AAAGCCGACG AGGTGGGGTT GCTGGAGGTG
GCCCGCCGCC GCGGCTGGCC GCTGGTGGTG CACCCCCCGC AGGCCCTGGC CGTGGTCACC
GTGCCGCACC CGTCGGAGGT GGTGCGCGCC GCGGTCGGCA CGCCGAGTGT CGCCGAAGCC
GCCAGTCTCC TGCCCGCCCC GCCCGCCGCC AGCCCGCCGA CCGCCGCGAT GGGCGGCATC
CCGGACGGCG CGACGGCCGG CGAGTCAACC GGCGTACCGG CGGTGACGGC GCAGCTGGTG
GTCGCCAAGC AGGTCAGCGC GCACGCGACC GTCGCTGTGG CCCGGCATCG GCCCCGCGGC
CGGCTCGCCG TCGTCGGGCT CGGTCCCGGG GACCGTCGGC TACTCACCCC CGCCGCCCGC
GCCGAGCTGG CCCGCGCCCG GATCGTGGTC GGGTTGGACC AGTATGTGCG GTCCGTCGCC
GATCTGCTGC CCGCCGGGGT CACCGTGCTC GACAGCGGGC TCGGTGACGA GCAGGCCCGC
GCCGAGACCG CCGTCGCACA CGCCCGCGCC GGGCATGCCG TCGCGCTCAT CGGCAGCGGT
GACGCCGGGG TGTACGCGAT GGGCAGCCCC GCGCTCGACC TGGCCGACGG GTCGTTCGAC
GTGGTCGCCG TGCCGGGGGT GACCGCGGCG CTCGCCGCCG CCGCGCTGCT CGGCGCCCCG
CTCGGGCACG ACCATGCGCT GATCAGCCTG TCGGACCTGC ACACCCCGTG GGAGCGGATC
GTGGGCCGGG TCCGCGCGGT CGCCGAAGCC GACCTGGTCG TCGCGTTCTA CAACCCGCGC
AGCCGCACCC GACGCCACCA GCTACCCGAC GCCCTCGACG TGCTCGCCGC GCACCGCCCG
GCCGGCACCC CGGTGGGGAT CGTCACCGAC GCGTTTCGGC CCGCCCAGCG GATCACCGTC
ACGACCCTCG GTGCCCTCAC CGACCGCACA GCCACCCAGG ACGGTGCGGG TGGGGTTGGT
GAGCGGGAGC GGCTGCTGGA CCTCGTCGGG ATGACGACCA CGGTCGTCGT CGGCTCGAGC
CAGACCCGGC TGCGCGCCGG CCTGGTCGTC ACCCCACGGG ACTACACGTG GCGCTGA
|
|---|
| Protein sequence | MSHPGRGTGQ PVDGAGPGRG RVSFVGAGPG AADLITVRGA AVLAAADVVI WASSLVHPAI
LGHARDGAEL IDSAALPLEG VEAVYRRAAE QGLHVARVHS GDPALWGAVQ EQLEICDRLG
LDSDIVPGVS SFTALAAALR RELTVPEVAQ SVILTRLGGG KTPMPPGEEV RDLARHGTTM
ALFLSAARSG QLREELLAGG YPPDTPCVVA YQVSWPDELI VRATLDTLAD TVKAHRLWKH
TLVLVGPALV AGGRRSHLYH PGHFHTYRRA QSGARTVLRD ADRELAAAGA TQLPASPHPV
APAPAVLERE RGAPAEPVAP QGAAVDGAGL VALVAVTAAG RAAAGDLTRR WPTARLYPGR
PRDAITAALA DGVTGIVCFL ATGATVRLLD GLLRGKDHDP GVVCVDEARR FAVALCGGHA
GGANRLAEQV ADALGATPVI TTASDAIGVS ALDGFGAELG FTVEPGSELA AVGTAVLSGH
PVALHADAVW PLPPLPPSVT TTITGTGAVD GGAVGVDGTA VASIHVTDRL LGAPPDGAGP
RVVYRPPSLV VGVGASRGAP ADEIDVLIDT ALAGAGLSPL AVTHLASVTA KADEVGLLEV
ARRRGWPLVV HPPQALAVVT VPHPSEVVRA AVGTPSVAEA ASLLPAPPAA SPPTAAMGGI
PDGATAGEST GVPAVTAQLV VAKQVSAHAT VAVARHRPRG RLAVVGLGPG DRRLLTPAAR
AELARARIVV GLDQYVRSVA DLLPAGVTVL DSGLGDEQAR AETAVAHARA GHAVALIGSG
DAGVYAMGSP ALDLADGSFD VVAVPGVTAA LAAAALLGAP LGHDHALISL SDLHTPWERI
VGRVRAVAEA DLVVAFYNPR SRTRRHQLPD ALDVLAAHRP AGTPVGIVTD AFRPAQRITV
TTLGALTDRT ATQDGAGGVG ERERLLDLVG MTTTVVVGSS QTRLRAGLVV TPRDYTWR
|
|---|
| |