| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4025 |
|---|
| Symbol | |
|---|
| ID | 5672383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4800042 |
|---|
| End bp | 4800791 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641242901 |
|---|
| Product | dTDP-4-dehydrorhamnose reductase |
|---|
| Protein accession | YP_001508318 |
|---|
| Protein GI | 158315810 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.409748 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.676846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG TTGTGATCGG TGGCGGCGGG CTCGTCGGCT CCCGGGTTGT GGCCCGGCTG
GCCGGGATCG GGCACCAGAC GGTGGCCGCC TCGCCCCGGA CGGGCGTCAA CGCCCTCACC
GGCGAGGGCC TGGCCGCCGC TCTCGACGGC GCCGCCGTGC TCGTCGACGT GTCGAACTCA
CCATCGTTCG AGGACGACGC GGTGCTGCGC TTCTTCCAGA CCTCGACCGC CAACCTGCTC
GCCGCCGAGG CGGCCGCCGG GGTCGGGCAC CACGTGGTGC TCTCGGTGGT CGGCACCGAA
CGCCTCGCCG CCAGCGGGTA CTTCCGCGCG AAGAGCGCCC AGGAGGCACT GGTCGCGGCC
GGCCCGATCC CCTACTCCGT CGTCCGCGCC ACCCAGTTCT TCGAGTTCGT CGGCGGCATC
GCCGACGCGG GCACCGAGGC CGGCACCGTG CGCGTCCCCC CGGTGCACAT CCAGCCGATC
GCGGCGGACG ACGTCGCCGC CGGGGTCAGC GGCGCCGCGC TCGGGACACC GACGAACGGC
GTCACGGAGA TCGCGGGCCC GGAGCGGTTC CGGCTCGACG ACCTCGTCCG CGCGGTGCTG
TCCGCCCGCG ACGACCCTCG CCCCGTCGTC GCCGACCCCC GGGCACGCTA CTTCGGCGCG
CCGCTGGATG ATGAAACCCT GGTGCCCGGC GACGGCGCCG CGCTCAGCGA GACCCACCTC
GTCGACTGGC TGAAGGAGTC GACTGGCTGA
|
|---|
| Protein sequence | MKIVVIGGGG LVGSRVVARL AGIGHQTVAA SPRTGVNALT GEGLAAALDG AAVLVDVSNS
PSFEDDAVLR FFQTSTANLL AAEAAAGVGH HVVLSVVGTE RLAASGYFRA KSAQEALVAA
GPIPYSVVRA TQFFEFVGGI ADAGTEAGTV RVPPVHIQPI AADDVAAGVS GAALGTPTNG
VTEIAGPERF RLDDLVRAVL SARDDPRPVV ADPRARYFGA PLDDETLVPG DGAALSETHL
VDWLKESTG
|
|---|
| |