Gene Franean1_4005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_4005 
Symbol 
ID5672364 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4786845 
End bp4787837 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content70% 
IMG OID641242882 
Productcyclase/dehydrase 
Protein accessionYP_001508299 
Protein GI158315791 
COG category[S] Function unknown 
COG ID[COG5637] Predicted integral membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.290687 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.973287 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGGA CGACGGAGCA ACCACACGGC CTGGTCGGCG CCCTCCTGCG CAGTCCGGCG 
AGCAAGAGGC TCGCCGACCA GGCGGGAGAC CTGGCGAAGG CGGGCGGCAG CCGGCTGGCC
GGGCGGGTCG GTGAGCGACT CACCTCCAGC ACGGACAAAC TCAACGGTCT CAGCGACTCC
GGCGGGCGGA TCTCGTCGCT CGCCGAGGGC GCCGGGAGAC TGGTCGAGGG CCAGTCTCCG
CTGAAGGCGG CGGCCGGGAC GATCATGTCG AACGTCAAGG ACAAGGTGAA GGGGGCCCTC
GGCGCCGCCA AGGGCAGGGC CGGCGGGAAG AGCGGGCCGC CCAAGGCGAT GAACATCGAG
GAGGCCGTGG ACGTCGGCGT CCCGGTGTCG GTCGCCTACG ACCAGTGGAC GCAGTACCCC
GAGTTCGCCA AGTTCATGAA AGGCGTCGAG GCGGTCGAGA CCAAGAGCGA GACCGAACAG
AACTGGCGGG TCAAGGTCTT CCGCTCCAGG CGCAGCTGGC AGGCAAAGGT CACCGAGCAG
ATCCCCGACC GCCGGATCGT CTGGACATCC GAGGGAGCGA AGGGCTCGGT CAAGGGCGCC
GTCACCTTCC ACCCGCTCGC CGACGACCTG ACGCGCGTGC TGCTGGCGAT GGAGTACTAC
CCCAGCGGGT TCATGGAGAA GACCGGCAGC CTGTGGCGCG CCGGTGGGCG ACGGGCCCGG
CTGGATCTGA AACACTTCCG CCGCTTCGTC ATGTTCAGTG GGGAGGCCAC CGGCTCCTGG
CGGGGCGAAA TCCGGGACGG CAAGGTCGTT CGCTCCCCGG ACGAGGACCA ATCCGAACCC
CGCGAAACCC GGGAGGAGGC GCGGAGCTCG GAAACCACGC AGGCCGCACA GGACAGTGAC
GACCAGGGCG CGGCGACGTC CGGGGAATCC GAGGTGCGGG CCGGGTCGAA GTCCGACCAG
CCCGCCGGTG CCGACGAGCC TGTCCGAGCC TGA
 
Protein sequence
MTRTTEQPHG LVGALLRSPA SKRLADQAGD LAKAGGSRLA GRVGERLTSS TDKLNGLSDS 
GGRISSLAEG AGRLVEGQSP LKAAAGTIMS NVKDKVKGAL GAAKGRAGGK SGPPKAMNIE
EAVDVGVPVS VAYDQWTQYP EFAKFMKGVE AVETKSETEQ NWRVKVFRSR RSWQAKVTEQ
IPDRRIVWTS EGAKGSVKGA VTFHPLADDL TRVLLAMEYY PSGFMEKTGS LWRAGGRRAR
LDLKHFRRFV MFSGEATGSW RGEIRDGKVV RSPDEDQSEP RETREEARSS ETTQAAQDSD
DQGAATSGES EVRAGSKSDQ PAGADEPVRA