Gene Franean1_3906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3906 
Symbol 
ID5672267 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4672863 
End bp4673294 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content68% 
IMG OID641242785 
Producthypothetical protein 
Protein accessionYP_001508202 
Protein GI158315694 
COG category[R] General function prediction only 
COG ID[COG1545] Predicted nucleic-acid-binding protein containing a Zn-ribbon 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0256992 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0925623 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACAGA TTCCCTTTGC TCCCGACGTG TTCACCTGGC CCGCGGAGAA ACCACAGTTG 
ATCGGCGCCC GCTGCCGCAG CTGCGCGGCG GTCACGTTCC CCGCGCAGGA TTCCTGCCCG
CGCTGCGGCA AGCTCGAGAT GGAGCAGCGC CTGCTGCCGC GCGAGGGCAC CCTGTGGACG
TGGACCACCC AGGAGTTCCT GCCCAAGGAG CCCTACGCCA GCGGTGAGAC GCCCGAGACC
TTCAAGCCGT TCGCGGTGGG CCTCGTGCAG CTCGGGGACG ACGTGCGCGT CGAGGGCCGC
CTGACTGTCA GCAAGCCCGA CGAGATCAGG TTCGGGATGG GGCTCGAGCT GGTGATCTAC
CCGTTCCGCA CCGACGAGGA CGGTACCCAG GTGCTGTCGT ACGCGTTCGC GCCGTCCGAG
GGAGGAAACT GA
 
Protein sequence
MAQIPFAPDV FTWPAEKPQL IGARCRSCAA VTFPAQDSCP RCGKLEMEQR LLPREGTLWT 
WTTQEFLPKE PYASGETPET FKPFAVGLVQ LGDDVRVEGR LTVSKPDEIR FGMGLELVIY
PFRTDEDGTQ VLSYAFAPSE GGN