| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3879 |
|---|
| Symbol | |
|---|
| ID | 5672242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4611103 |
|---|
| End bp | 4611945 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641242757 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001508177 |
|---|
| Protein GI | 158315669 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2326] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.006631 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACAG GCCGGTCACC ACGGCCGACA GTTGCCGCCA TGCCCGCCGA CGTGACCCCG
GAGCGCCTGT CGAGGGCGGC CTACGACAAG GAGCTGGCCC GGCTGCAGAC CGAGCTGGTG
CGACTGCAGG AATGGATCGT CCACTCCGGG CGGCGGGTCG CCGTCATCAT GGAGGGCCGG
GACACCGCCG GCAAGGGCGG CGTCATCAAA CGCATCACCG AACGTCTCAA CCCCCGCCAT
TTCCGGGTCG TCGCCCTCGG CACGCCGACC GAGCGGGAAC GCACCCAGTG GTACTTCCAG
CGTTACATCA CCCATCTGCC GGCGGGCGGC GAGATCGTGT TCTTCGACCG GAGCTGGTAC
AACCGGGCCG GGGTGGAACG GGTGATGGGA TTCTGCACCG ACGAGGAATA CGAGGAGTTC
CTGCGGACGT GCCCCCAACT GGAGCGCGCG CTGGTCCGGT CGGGGCTGAC CCTGGTCAAG
TACTGGCTCT CGCTGAGCGA CGCCGAGCAG GAGCGCCGGT TCGCGGACCG GATCAAGAAC
CCGGAGAAGC GCTGGAAGCT CTCCGACATG GACCTGCAGG CCCGTGCCCA CTGGGTCGAC
TACGCCGAGG CCAAGGACGA GATGTTCGCC TACACCGACA TCCGGCAGGC CCCGTGGTAC
GTGGTCGACG CGGACGACAA GCGCAGCGCC CGGCTGAACC TGATCAGCCA CCTGCTGTCG
ACGGTGCCCT ACGAGACCGT CCCCTACCCG GCCGTCGACC TGCCGCCGCG TCAGGACCGA
GCCTACAAGC GCCCGCCGAT CGACAGCCAG ACCTGGGTCC CCCGCCGCTA CGTCGTCGAG
TGA
|
|---|
| Protein sequence | MLTGRSPRPT VAAMPADVTP ERLSRAAYDK ELARLQTELV RLQEWIVHSG RRVAVIMEGR
DTAGKGGVIK RITERLNPRH FRVVALGTPT ERERTQWYFQ RYITHLPAGG EIVFFDRSWY
NRAGVERVMG FCTDEEYEEF LRTCPQLERA LVRSGLTLVK YWLSLSDAEQ ERRFADRIKN
PEKRWKLSDM DLQARAHWVD YAEAKDEMFA YTDIRQAPWY VVDADDKRSA RLNLISHLLS
TVPYETVPYP AVDLPPRQDR AYKRPPIDSQ TWVPRRYVVE
|
|---|
| |