| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3873 |
|---|
| Symbol | |
|---|
| ID | 5672236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4603052 |
|---|
| End bp | 4603921 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641242751 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001508171 |
|---|
| Protein GI | 158315663 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.195534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0802572 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCT CGACGAGCGT GGGCCCGGCG GCGCCGCCAC GCCCGGGCAC CGGCGCGCGG
GCCGGTGCGG GCACCGGCCC GCCGCCCGGC GGTGAGCTGG CCGTACAGGT CCGGGCGGCC
CGTAAGACCT TCGAGCGCCC GGTGCTCGAC GGGGTGGATC TCGCCATCCA CGCTGGCGAG
TTCGTGGCGC TGCTCGGTGC CAGTGGCAGC GGCAAGACCA CACTGCTGCG CATCCTCGCC
GGCCTCGAGG CCGCCGACGA CGGCGCGGTG TGGGTGCCGC CCACCCACAC CGTCGTCTTC
CAGGAGCCCC GGCTGGTGCC GTCGCAGAAG GTCTGGCGCA ACGTCGTCGT CGGGCAGCGG
GGTGGCCGCG GCGCGCGCGA GGCGGCCCGC GCCGCCCTCG CAGAGGTCGG GCTGGCCGAA
TGGGCGGACG CCTGGCCGTC CACGCTCTCC GGCGGGCAGG CCCAGCGGGT CGCGCTGGCC
CGGGCACTGG TGCGCGAGCC GCGGCTGCTC CTGCTTGACG AGCCGTTCGC CGCGCTCGAC
GCGCTCACCC GGATCAGGAT GCGCGAGCTC ATCGGCGAGC TCTGCGCCCG GCACCGGCCG
GCCGTGCTCC TGGTGACCCA CGACGTCGAC GAGGCCGTCG TCCTCGCCGA CCGCGCCGTT
GTGCTGACCG ACGGCCGGAT CTCGCTCGAC CGGCCGATCG GCCTGCCCCG CCCGCGCGCC
GTCGGCGACC CGGGCTTCGC GCAGGCCCGC CGCCTGCTGC TCGAGGAGCT GGGCGTCCAC
GAGCCACGGC AGGCCGGCGA GGCGTACCCC GGGACGACCG GGAACGACAG GGCTACGGAT
GGCCTGGAGA GTCCGGGTTT CACTACCTGA
|
|---|
| Protein sequence | MSRSTSVGPA APPRPGTGAR AGAGTGPPPG GELAVQVRAA RKTFERPVLD GVDLAIHAGE
FVALLGASGS GKTTLLRILA GLEAADDGAV WVPPTHTVVF QEPRLVPSQK VWRNVVVGQR
GGRGAREAAR AALAEVGLAE WADAWPSTLS GGQAQRVALA RALVREPRLL LLDEPFAALD
ALTRIRMREL IGELCARHRP AVLLVTHDVD EAVVLADRAV VLTDGRISLD RPIGLPRPRA
VGDPGFAQAR RLLLEELGVH EPRQAGEAYP GTTGNDRATD GLESPGFTT
|
|---|
| |