Gene Franean1_3868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3868 
Symbol 
ID5672231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4598832 
End bp4599545 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content72% 
IMG OID641242746 
ProductABC transporter related 
Protein accessionYP_001508166 
Protein GI158315658 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0411] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.25715 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCATTGC TGGAGGTTAA GAACGTGACG GTCGCCTTCG GGGGCGTTCG CGCCCTCGAC 
GGCGTCGCCA TCGCGGCCGA GAAGGGGCGG GTCACCGGGC TGATCGGGCC CAACGGGGCC
GGCAAGAGCA CGCTGTTCGA CGTGATCTCC GGGCTGCGCC GGCCGTCGTC CGGGCAGGTG
TTCATCGACG GCCACGACGT CACCCGGCTG GGCCCGTCAC GGCGCAGCAA GCACGGGCTG
GCCCGGACGT TCCAGCGGCT GGAGCTGTTC GGCCGGCTGA GCGTGCGCGA CAACCTCCTC
GTCGCCGCGG AGCTGGGCCC GGAGCGTCGC AACGCGGCGA CCCTGGTCCC CGAGGTACTG
GACAGGCTCG GCCTGACCGG CATCGCGGAC ACCTCCGCCG ACACGCTGCC GACGGGCGTC
GCCCGGCTGG TGGAGGTGGC CCGGGCGCTG ACGGTCCGGC CGAAGCTCCT CCTGCTCGAC
GAGCCCGCCG CCGGGCAGGA CGCCGAGGAG ACCGAGCGCT TCGCCGACCT GCTGCGCTCG
CTCGCCGCCG ACGGGACCAC CGTGGTCATC GTCGAACACG ACATGGATCT GGTCATGAGC
GTGTGCGACG ACCTGTACGT GCTCGACCTG GGCAAGGTCA TCGCCGCCGG CTCTCCGGAG
GAGATCCGGC GCGACGAGCT CGTCCTGGCC GCCTACCTGG GAGACGCGGC ATGA
 
Protein sequence
MALLEVKNVT VAFGGVRALD GVAIAAEKGR VTGLIGPNGA GKSTLFDVIS GLRRPSSGQV 
FIDGHDVTRL GPSRRSKHGL ARTFQRLELF GRLSVRDNLL VAAELGPERR NAATLVPEVL
DRLGLTGIAD TSADTLPTGV ARLVEVARAL TVRPKLLLLD EPAAGQDAEE TERFADLLRS
LAADGTTVVI VEHDMDLVMS VCDDLYVLDL GKVIAAGSPE EIRRDELVLA AYLGDAA