| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3866 |
|---|
| Symbol | |
|---|
| ID | 5672229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4595342 |
|---|
| End bp | 4596736 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641242744 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001508164 |
|---|
| Protein GI | 158315656 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.679852 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGACCCC GTAGAACTGT CGCGGCCGTC GCTGCCCTCG CAGCGGTGAC CGTCTTCGTC
GCAGGATGTG GCCGCGACTC GGGCGGCGAA TTAGGGAGTG AGGACACTCC CGCCACCCAG
GGGTCCACGG CCGCCGCAGC GGGTGACTTC GGCGACCTGA AGGACGTCTG TGGCACCGGC
GACCCGAAGG GCGCGCCCGC TCAGGGCGTG ACCGCGAGCG AGATCAGCGT CGGTGTCTTC
AGTGACGTCG GCTTCACCAA GAACTCTGAG TTCGACGACG CCGCCAAGGT GTTCACCTCC
TGGTGTAACG AGGCCGGCGG CATCAACGGT CGCAAGATCG CCTACAACCT GCGGGACTCG
AAGATCTTCG AGACCCGCCA GCGGATGATC GAGTCCTGCC GCGAGGACTT CGCGATCGTC
GGCGGTGGCA GCGCGCTCGA CGCCGGCGGC GTGGAAGAGC GCCTCAAGTG CCTGCTCCCC
GACATCCCCG CGCAGACGAG CCAGCCGGAG AACATCGGCT CGGACCTGCA GATCGACGCG
ATCGGCGCCG GGCACTCCTA CATCCGCTAC GCCGGTTACT TCAACTGGCT GCTGAAGGAG
GCCTACCCGG CCTCCGCCGG TGCGGTCGGC ATCATCGCCG GTGACTCCCC GGTGACCAAG
GTCATCGGGG ACCAGACGGT GGAGGCCGTG CAGAAGGCCG GCGGGACGGT CGCCTACAAC
GACCTCTACC CGGCGGCCGG CGTCTCGGAC TGGACGCCCT ACGCCCAGGC GCTCAAGAGC
AAGGGCGTGA AGGGCCTGGT CTTCCAGGGC GACTTCCGCA GCCTCGCGAA GCTCGAGCAG
GTGCTGTCGT CGATCGACTA CAAGCTCGAC TGGATCGACG CCAACAGCAA CGCCTACGGA
TCCGCGTTCG TGGAGCTCGC CGGCGACGCC ATCAGCACCC AGAACAACCT GGCCGACCTC
AGCGGGGTCG CGCCTCTCGA GGTGGCGGAC GAGATCCCCG CCGTCCAGAA GGTCCTGGAC
CTCTACAAGG AGTACGCGCC CGACGCGGAG GTCACCTTCC CGGCACTGCG CGCCTTCTCG
TCCTGGCTGC TGTTCGCGGA GTCGGCCAAG GAGTGCGGGG ACGACCTCAC CCGCAAGTGC
CTCTACGACA CGGCGCGCGA GCAGACCAAG TGGACTGCCG GTGGCCTGCA GGCCTCGGTC
GACATCACCA AGGCCGACGC GCCGCTGAAG TGCTTCAACG TCGTGCAGGC GAGCGCGGAC
GGCTGGAAGC CCGCGGACTT CGAGCCTGAC ACCGGTGTGT TCCGCTGCGA TGCCCCTTCC
GTCAAGTACA CGGGCTCGTA CGGCACGCCG CTCACCCTCG CCAGCGTCGG CAAGAGCCTG
AGCGACCTCA AGTAA
|
|---|
| Protein sequence | MRPRRTVAAV AALAAVTVFV AGCGRDSGGE LGSEDTPATQ GSTAAAAGDF GDLKDVCGTG
DPKGAPAQGV TASEISVGVF SDVGFTKNSE FDDAAKVFTS WCNEAGGING RKIAYNLRDS
KIFETRQRMI ESCREDFAIV GGGSALDAGG VEERLKCLLP DIPAQTSQPE NIGSDLQIDA
IGAGHSYIRY AGYFNWLLKE AYPASAGAVG IIAGDSPVTK VIGDQTVEAV QKAGGTVAYN
DLYPAAGVSD WTPYAQALKS KGVKGLVFQG DFRSLAKLEQ VLSSIDYKLD WIDANSNAYG
SAFVELAGDA ISTQNNLADL SGVAPLEVAD EIPAVQKVLD LYKEYAPDAE VTFPALRAFS
SWLLFAESAK ECGDDLTRKC LYDTAREQTK WTAGGLQASV DITKADAPLK CFNVVQASAD
GWKPADFEPD TGVFRCDAPS VKYTGSYGTP LTLASVGKSL SDLK
|
|---|
| |