| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3858 |
|---|
| Symbol | |
|---|
| ID | 5672221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4586246 |
|---|
| End bp | 4587676 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641242736 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001508156 |
|---|
| Protein GI | 158315648 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR01386] heavy metal sensor kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.296973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCTGC GGGTACGACT GACCCTGCTG TTCGTCCTGG GCACCACGCT GGTGCTCGCG
GCCGCCGGCG TGCTGTTCTA CGCGCTGCTG CGCACCAACC TGCGGAACTC CGTCGACGCG
AACCTGCGCA CCCGGATGGC CGTGCTCGCC GCGCAGGTCC CCGCCGCGGC GGACCCGGCC
GCGCAGCTGC GGGCCTACGG CGCCGGGCCC GCCCAGCTGC TGCGCCCCGA CGGCTCCGTC
GCCGCCTCGA ACGACAGCGC CGGTCCCGAG CCGCTGCTCG AGCCCGCCCA GGTGGCCACG
GCGCTCGCCC GCTCGGAGTC GCTCACGTCC GGCGAGCTGC GGGAGCCGGG CGGCGACGAT
GACGACGCGC GCGCGCTGGC CGTCCCGGTG CGGACCGGGG CGCGGGACGG GGTTTTGGTC
GTCGCGACGA GCACCGATCT GACCGACTCG GCCGAGGACC GCGTCCGCAA CATCATGGTC
AGCGCGACGG CGCCGATGGT CGCGCTCTCC GGGCTCGCGG CCTGGCTGCT GTCGGGCGCC
GCCCTGCGCC CGGTCGATCG CATGCGCCGG CAGACCGCCG CCATCAGCGA GTCGGACAGC
TCCGCCGAGC TGGACGTGCC CCCGACCCGC GACGAGATCG CCGCCCTGGC CGCCACGATG
AACAACCTGC TGCGCCGGCT GCACGCCGCC CGCGCCCGCG ACCGGGCGTT CGTCGCAGAC
GCCGGGCACG AGCTGCGGAC CCCGCTCACC AACCTCAAGG CCGAGCTCGA GCTCGCCGGC
CGCCCGGCCC GCACCCGCGA CGAGCTCGTC GACGCGGTCG CGGGCGCGGC GGAGGAGACC
GAGCGGCTGA TCCGGCTCTC CGAGTCACTG CTCACGCTCG CCCGGATGGA CAGCGGCATC
ACCGCCCCGC GGCGGCTGGA CGCCGGCGAC CTCCTCGAGC GGGCCGCCCG CGCCGCGACC
GGCCACGCCG AGACCAGGCA GGTCCGCCTC CACCTGGACG CCGACCCGGG CCTCGCCGTG
GACGCGGACC CCGACATGCT CCGCCAGGCG GTCGACAACC TGGTGGCCAA CGCCATCCGT
CACGCGCCGC CCGGCACCGC CGTGGACGTC CGGGCCGGGC CGGGTGAGGC CGGGAGGACC
GTCGTCGTGC GGGTGCGTGA CCGCGGCCCG GGGTTCCCCC CGGACTTCCT GCCGCGTGCC
TTCGAACGTT TCAGCCGCGC CGACGCCGCG CGCACCCGCG ACCACGGCGG CACCGGCACC
AGCGGAAACA GCAGCGGGAC GGGCCTTGGT GGCACCGGGC TCGGGCTCGC CATCGCCGCG
GCGGTGGCGC GGGCCCACCA GGGGACCGCC ACCGCCGCCA ACCATCCCGA CGGCGGCGCC
GTCGTCACGC TCACGCTGCC CGCCGCGGGC GGTCTCCCGC CGGACCGGTA G
|
|---|
| Protein sequence | MPLRVRLTLL FVLGTTLVLA AAGVLFYALL RTNLRNSVDA NLRTRMAVLA AQVPAAADPA
AQLRAYGAGP AQLLRPDGSV AASNDSAGPE PLLEPAQVAT ALARSESLTS GELREPGGDD
DDARALAVPV RTGARDGVLV VATSTDLTDS AEDRVRNIMV SATAPMVALS GLAAWLLSGA
ALRPVDRMRR QTAAISESDS SAELDVPPTR DEIAALAATM NNLLRRLHAA RARDRAFVAD
AGHELRTPLT NLKAELELAG RPARTRDELV DAVAGAAEET ERLIRLSESL LTLARMDSGI
TAPRRLDAGD LLERAARAAT GHAETRQVRL HLDADPGLAV DADPDMLRQA VDNLVANAIR
HAPPGTAVDV RAGPGEAGRT VVVRVRDRGP GFPPDFLPRA FERFSRADAA RTRDHGGTGT
SGNSSGTGLG GTGLGLAIAA AVARAHQGTA TAANHPDGGA VVTLTLPAAG GLPPDR
|
|---|
| |