| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3753 |
|---|
| Symbol | |
|---|
| ID | 5672118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4445473 |
|---|
| End bp | 4446456 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641242634 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001508054 |
|---|
| Protein GI | 158315546 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGTCT CGGCTGCCCA CATCGCCAGC CCGGCCGCCG GAGCCGGCCC GGCCACCCGC
GGAACCGGCC CGGTCACCAC CGGAGCGGAT CCGGTCACCA CCGGAGCCGG CCGCGCCGCC
GGCGAGGCGC TGCTCGACGA GTCCCAGCCC GGCGGACGGC GAGCCAACCT CGCCGCGAGT
CTGCGGACCC TCGGTTCCAG GCCGGGATTC GTGATCGCGG TGCTGTTCAT CGCCTTCGTG
GTGGTGACGG CGTTCGCGCC GGGCCTGTTC ACCTCGCACG ATCCCTACGC GACCGCGCCG
GCCGACCGGC TGGTCGGCCC GGGTGCCGGC CACCTGTTCG GCACCGACGA GCTCGGCCGC
GACCTGTGGT CCCGCATGCT GCACGGCTCG GCACTGACGA TCAAAGCCAC CCTGATCGCG
CTCGGGATCG CGATCGTGGC CGGACTCGCG CTCGGCGTGA TCGCCGGCTT CTTCGGTGGT
CTCGTCGACG CGCTGCTCAT GCGGGGCGTG GACGTGCTGC TGGCCATCCC GAGCCTGCTG
ATGGCGCTGT CCATCGTCAC GGCCCTGGGT TTCGGCACGG TGCCGGTCGC CGTCGCCGTC
GGCGTCGGCA TCGTGCCGGG ATTCGCCCGG ACCACCCGCG CCGAGGTGCT GCGGGTGAAG
ACCCTGCCCT ACGTCGAGGC GGCGCGTGGC GGGGGGGCGT CCTGGCTGCG GGTGCTGCTG
CGCCACGTGC TGCCGAACTC GTGGGGCCCG GTCGCCGTGC TCGCCGTGCT GGACACGGGC
GTCGCGATCA TCGCGATCGC GTCGCTGAGC TTCCTGGGCT TCGGCGCGGC GCCGCCGACC
GCCGAGTGGG GCACCCTCAT CTCCGCCGGC CGCAACTACC TCATCACCGC TCCGTGGGTC
TCGCTGCTCC CCGGGCTGTT CGTCGCCATG ACGGTGCTGA GCCTCAACCA CATCTCGAAG
ACCCTCCAGG AGCTCGAGCG ATGA
|
|---|
| Protein sequence | MTVSAAHIAS PAAGAGPATR GTGPVTTGAD PVTTGAGRAA GEALLDESQP GGRRANLAAS
LRTLGSRPGF VIAVLFIAFV VVTAFAPGLF TSHDPYATAP ADRLVGPGAG HLFGTDELGR
DLWSRMLHGS ALTIKATLIA LGIAIVAGLA LGVIAGFFGG LVDALLMRGV DVLLAIPSLL
MALSIVTALG FGTVPVAVAV GVGIVPGFAR TTRAEVLRVK TLPYVEAARG GGASWLRVLL
RHVLPNSWGP VAVLAVLDTG VAIIAIASLS FLGFGAAPPT AEWGTLISAG RNYLITAPWV
SLLPGLFVAM TVLSLNHISK TLQELER
|
|---|
| |