Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3744 |
Symbol | |
ID | 5672109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 4433201 |
End bp | 4435699 |
Gene Length | 2499 bp |
Protein Length | 832 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 641242625 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001508045 |
Protein GI | 158315537 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.726032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTCGCT GCCCGGCGAC GGCGCTGGCC GCGGCCCGCC TGAAGGCGGT GAACGTGATG GTCGACGCGT CCGCGCCGCC AGTCGATCAA CCGCGGACGG TACCGCGCCA GGCGGCGGCC GGCAGCGGCT ACTTCTGGCC GGCGGTGGTG ATCAGCGTGC TGCTGGTCGT CGGATCGGCG GTCGTCGCGG TCGCCCTGCC GGCCCGGCCG GCACTTCTCA CCGTCCGCCT GATCATGATC TTCTGTCTGC TGCTGGGCGG CGGGACCTGC GTCGTGACGG GCCTGCGCCG GCGCGGCGCG GAACGCGCGT GGCGGCTGCT GGTCGCGGGG ATGGTGCTGG GTATCGGCGC CGGCGCGGCG GAGATGTTCC CGGCCATGGC CAGCCGCGGG CCACCGGTCC CGCGGCAGGA CGCGTCCTCG CTCGCCTACC TGATCCCGCA GGCGTTCGGG CTGGCCGGAG TGCTGTGCTA CCCGACCGAC CCGTTCGACC TGTCACTGCG GCCGCCGGGG CGGGGCCGCG ACCGCCGCTG GTACGTGATC ACGATCATGG ACGGTCTGAT CGTGGCCGGC GCGGTGACGC TGCTGGCCTG GATCGCCATC CTCGAGGACG CGATCGCGGC GCGGGGGCCG CTGGGTGACG GGCCCATCTA CTCGATCGTC CTGTCCGCCA ACACCCTGAT CATCGCCGTG GTGGTGATCC TGGTCGCGGT GTTCCGCCAG CCGCGCTCCG GCGGTGGCCT GAGCCTGCTG ATCATGGGGC TGCTCACCGT CACGGCCTCG ATCGCCAGTT ACATGGCGGT GGTCGTCCGT GGTGGGACGG ATGTCCCGCG GCTGCTGGAC CTGCTGCTGA TCGCCGGGCC GCTGCTGGTC GGGCTGGCGG CGCTGGCGCC GGAGACGTCC CGGCCGTGGC GCGCCGCCGT GGACGGGAGC GGTGACACGT TCGTCCCCTC GCGGCGCCGG CGGTGGCACG CCATGTTGCC GTACCTGCCG CTGGCCGCGG CCGGCGTCGC GACGCTGCTC GAGCTCTCCG GGGAGGACCT CGCCCAGCAG GAGGAGATCT GGGCGCTGCT CGCCCTGCTG CTGATCGCGC TGCTCCGGCA GATGACCACG ATGAGCGACA ACATCCGCCT GCTCGGCCAG GTGGAGGAGA AGCAGCACCA GCTGCGCTAC CAGGCGTTCC ACGACCCGCT CACCGGGCTC GGGAACCGCG CCCTGTTCAC CGAACGGCTC GACTCGGCGC TGCGCCGCCG TGGCCCGGGC ACCGGACGTC TAGCGGTGCT CTTCTGCGAC CTGGACGGAT TCAAGCGGGT CAACGACGAG TTCGGGCACG CCGCCGGCGA CGACCTGCTG CGGGTGACCG CCCGTCGGCT GGCCGGGTGC GTGCGGCCGG CGGACACGGT CGCCCGGCTC GGCGGGGACG AGTTCGCGAT CCTGCTGGAC GCCGACGCCG AGGATCCCGG ATCAGTGGGG CGGCGGCTCG CCGCCGCGGT GCGGGCGCCG GTCCGGCTCG CCGACACCAC GTTCACCGTC GCGGCCAGCA CCGGCCTCGT CGTCGTCGAC CCGGCCGCCG GGCCCGTCAC CGCGGACGCC CTGCTGCACC GCGCCGACCT GGCCATGTAC GCGGCGAAAG CCCAGGGGGA CGGGCGGCAG ACGGTCTACA CCCCCGATCT CGCCGTGCCG CGCTCGGGCT CCGCGCTGCG GGCCGCGCTT GACGCCGCGG CCCGCGGTGA GCCCGCCGAC GGCCGGCTCG CCGTGATCTA CCGGCCCATC ATCGACCTCA CCACCGCCAC CCCGGTAGCC CACGAGGCGC GCCTCGCCTG GGTACACCCC GACCTCGGCG CCACCCGGCT GCTCCCCGCC GACGACGCCC TCGGCCTGGT GCCGGCCCTG GACCGGATCC TGCTGCGCGC TGCCTGCCGT GCGGACGGGT CGGGCCGTCC GCTGCCCGTG CACGTCACGA TCTCCGCCCG CCGGGCCGGC CAGCCGACCC TCGTCGACGA CGTCGCCGCC GCGCTGCGGG CGGCGGACCT GCCGCCCGCC GGCCTCGTCC TCCAGATCCG CCCCACTCCG CGCGCCGCCG GCCCGGCCGA CTTCGGTGAC GTAGTCAGCC GCGTCCGCGC CAGCGGGGTC CGGATCGGGC TCGCCGAGAT CGGGGCACCG GACACCCTGA TCGACGCCGC CATCGGCATT CTTGGCAGTG CCCCGGTGGA CATCATCACC GTCCATTCCG ACCTCACCGC GACCTGGACG GCTCCCGGCC GCGATGATCC GGCCGCGGCC CTCGCCCGCA CCGGCCTCGC GACCCTGATC GGTCTCGGCA TCACCGTGGT CGCTGACGGG GTGGATGGCC CGGCCACCGC GGCCCGCCTG CGGGAACGCG GCTGCCGGCT GGCCTTCGGT GATCCCTGCG GTCGTGCCCT CCTGCCAAAC CCGCTCCCGC ATGCCGACGC AGCCGATCAT GCCGACCCCC GTCATGCCGA CCGGTGCCGA TCGCCGTGA
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Protein sequence | MGRCPATALA AARLKAVNVM VDASAPPVDQ PRTVPRQAAA GSGYFWPAVV ISVLLVVGSA VVAVALPARP ALLTVRLIMI FCLLLGGGTC VVTGLRRRGA ERAWRLLVAG MVLGIGAGAA EMFPAMASRG PPVPRQDASS LAYLIPQAFG LAGVLCYPTD PFDLSLRPPG RGRDRRWYVI TIMDGLIVAG AVTLLAWIAI LEDAIAARGP LGDGPIYSIV LSANTLIIAV VVILVAVFRQ PRSGGGLSLL IMGLLTVTAS IASYMAVVVR GGTDVPRLLD LLLIAGPLLV GLAALAPETS RPWRAAVDGS GDTFVPSRRR RWHAMLPYLP LAAAGVATLL ELSGEDLAQQ EEIWALLALL LIALLRQMTT MSDNIRLLGQ VEEKQHQLRY QAFHDPLTGL GNRALFTERL DSALRRRGPG TGRLAVLFCD LDGFKRVNDE FGHAAGDDLL RVTARRLAGC VRPADTVARL GGDEFAILLD ADAEDPGSVG RRLAAAVRAP VRLADTTFTV AASTGLVVVD PAAGPVTADA LLHRADLAMY AAKAQGDGRQ TVYTPDLAVP RSGSALRAAL DAAARGEPAD GRLAVIYRPI IDLTTATPVA HEARLAWVHP DLGATRLLPA DDALGLVPAL DRILLRAACR ADGSGRPLPV HVTISARRAG QPTLVDDVAA ALRAADLPPA GLVLQIRPTP RAAGPADFGD VVSRVRASGV RIGLAEIGAP DTLIDAAIGI LGSAPVDIIT VHSDLTATWT APGRDDPAAA LARTGLATLI GLGITVVADG VDGPATAARL RERGCRLAFG DPCGRALLPN PLPHADAADH ADPRHADRCR SP
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