| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3704 |
|---|
| Symbol | |
|---|
| ID | 5672070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4386426 |
|---|
| End bp | 4387169 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641242587 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001508007 |
|---|
| Protein GI | 158315499 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGGGC GCACAGCGGT CGTCACCGGC GGCGGGTCGG GCATCGGGGA GGCCATCAGC
CGGCGGCTGG CCGCCGACGG GGCCCTGGTG GCGATCCTCG ACCTCGACGG CGCCGCCGCC
GCGGCGGTCG CGGCCTCCAT CGAGGAGACG GGCGGGAAGG CGATCGGCCT GGCTGCCGAC
GTGGCGGACC GCGCCGCGGT CAACGCGGCG GTGGATGAGG CCCGCGGCCG GCTCGGCCGC
CCGACGATCC TGGTCAACAA CGCCGGGATG ACCCGCCCGA GCCCGTTCCT CGAGATCACC
GACGCGATGT GGGAGAAGTC GCTCGCCGTC AACCTCAACG GCACCTTCTA CTGCTGCCAG
GCCATCCTGC CCGACATGCT CGCCGAGGGC TGGGGGCGCA TCGTCAACAT CTCCTCGTCG
AGCGTGCACA GCGGCACGCC CCGGCTGGGC TCCTACGTCA CCGCCAAGTC GGGGATCCTC
GGGCTCACCA AGGTGCTCGC CCTCGAGTTC GGGCCGCGCG GCGTCACCGT CAACACGATC
CCGCCGGGGT TCATCGACAC CCCGATGCTG CGCGCGCAGG AGCGGGGCGG CCTGATGAAC
GTCGAGCAGC AGACGGCCCG GACGCCGGTC GGCCGGATCG GGCGGGCCGA GGACGTCGCC
GCCGCCTGCG CGTTCCTCGT CAGCGACGAG GCCGGCTACA TCACCGGCCA GGTCTTCGGC
GTCAACGGCG GCCGGAACAC CTGA
|
|---|
| Protein sequence | MSGRTAVVTG GGSGIGEAIS RRLAADGALV AILDLDGAAA AAVAASIEET GGKAIGLAAD
VADRAAVNAA VDEARGRLGR PTILVNNAGM TRPSPFLEIT DAMWEKSLAV NLNGTFYCCQ
AILPDMLAEG WGRIVNISSS SVHSGTPRLG SYVTAKSGIL GLTKVLALEF GPRGVTVNTI
PPGFIDTPML RAQERGGLMN VEQQTARTPV GRIGRAEDVA AACAFLVSDE AGYITGQVFG
VNGGRNT
|
|---|
| |