| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3662 |
|---|
| Symbol | |
|---|
| ID | 5672028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4338709 |
|---|
| End bp | 4339527 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641242545 |
|---|
| Product | DNA-(apurinic or apyrimidinic site) lyase |
|---|
| Protein accession | YP_001507965 |
|---|
| Protein GI | 158315457 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGAAG GTCACACTGT GCACAGGTTG GCCGCCGTCC ACCAGCGGAT GTTCCGTGGC
CGGCCGGTGA CCGTGTCGAG CCCGCAAGGC CGGTTCGTCG ACGGCGCGCG CATGCTGGAC
GGGCAGGTGC TGGCCGAGGC TGAGGCGCAC GGCAAGCACC TGCTGCTGGA GTTCGGCGAC
GAACAGATCC TCCACATCCA CCTGGGTATC TATGGCACCT ACGCACTCGG TCCCGGCCCG
GCGCCCGTGC CGACGGGAGC CGTCCGGCTG CGGCTCACGG CCGACACCGG GTACGCCGAC
CTGCGCGGTC CCAATGCCTG CGAGCTGCTG GCACCCGGCG AGGTGAAGGT GCTGCGTGAC
CGGCTGGGCC CCGATCCGCT GCGTGCCGAC GCCGATCCGG CGCTGGCCTG GCGCCGGATC
GAGCGCAGCC GCACCCCGAT CGCCGTGCTC CTGCTGGACC AGAAGGTCGT CGCCGGGCCG
GGGAACATCT ACCGGGCCGA GGTGCTGTTC CGCGCCGGGA TCCACCCGCT GCTGCCGGGC
CGGGAGCTGG CCCGCGACCA GTGGGCGGCG ATCTGGGCCG ACCTGGTCAC GCTGATGGCA
GACGGGGTGC GGACGGGCCG GATCGACACC GTGCGCCCCG CGCACACCCC GGAGGCGATG
GGCCGCCCGC CGCGCGTCGA CGATCACGGG GGAGAGGTCT ACGTGTACCG CAGGACGGGC
CAGCCCTGCC TGATCTGCGC CGCCGAGGTG CGCACGGTGC AGCTGGCCGG CCGCAACCTG
TTCTGGTGCC CCGCCTGCCA GCCACCCGTT CCGGGCTGA
|
|---|
| Protein sequence | MPEGHTVHRL AAVHQRMFRG RPVTVSSPQG RFVDGARMLD GQVLAEAEAH GKHLLLEFGD
EQILHIHLGI YGTYALGPGP APVPTGAVRL RLTADTGYAD LRGPNACELL APGEVKVLRD
RLGPDPLRAD ADPALAWRRI ERSRTPIAVL LLDQKVVAGP GNIYRAEVLF RAGIHPLLPG
RELARDQWAA IWADLVTLMA DGVRTGRIDT VRPAHTPEAM GRPPRVDDHG GEVYVYRRTG
QPCLICAAEV RTVQLAGRNL FWCPACQPPV PG
|
|---|
| |