| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3593 |
|---|
| Symbol | |
|---|
| ID | 5671962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4255807 |
|---|
| End bp | 4256580 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641242479 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001507899 |
|---|
| Protein GI | 158315391 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCCGC CTGTTCCGAC CCCGAGGGAG GTGTTCGACC TCACCGGGCA CACGGCGCTC
GTCACAGGGG CCTCGTCCGG GCTGGGTGCC CGGTTCGCCC GGGTGCTGGC AGCGGCGGGG
GCCACGGTCT GGATCACTGC CCGGCGCCTG GACCGGCTGG AGAAGCTCGC CTCGGACGTC
GTGGGCCTGC GCCCGGTGGC CTGCGACGTG TCGGTCGAGT CCCAGCGTCT CGCGCTCGTC
GACGCGGTGG TCGCCGAGTC CGGGCGGTTG GATGTGCTCG TCAACAATGC GGGCACTGAC
AGCGGCGCCC TGCCGATGGA CGAGACTCCG GCGCAGTTCG CCGACGTGCT CGCGACCAAC
CTGGTGGCAC CCTTTCACCT GGCCCAGCTC GCCGCCCGGG CGGCCGGTGA GCACGGCCTG
TCGGTGATCA ATGTCGGATC GGTCCTGGGG CTGGTGTCGG CGGCGCCGAT GGGCGGGGCG
AGCTACGCAG CGGCCAAGGC GGGTCTGGCG GGGCTGACCC GGGAACTCGC TGGGCACTGG
GGCGGGCGCG GCGTTCGGGT CAACACACTG GCGCCTGGCT GGTTCCCCAG CGAGATGAGC
GCGGCGCTCC TGGACAGCGC GGACGGTGCC CGCTGGATCG CCCGCAACAC CATGCTGCGC
CGGGCCGGTG AGGCGGACGA ACTCGACGGC GCGTTGCTGT TCCTGGCATC GTCGGCATCC
AGCTACTGCA CCGGCCAGGT CCTCGTGGTG GACGGTGGTT GGACTGCGCG TTGA
|
|---|
| Protein sequence | MNPPVPTPRE VFDLTGHTAL VTGASSGLGA RFARVLAAAG ATVWITARRL DRLEKLASDV
VGLRPVACDV SVESQRLALV DAVVAESGRL DVLVNNAGTD SGALPMDETP AQFADVLATN
LVAPFHLAQL AARAAGEHGL SVINVGSVLG LVSAAPMGGA SYAAAKAGLA GLTRELAGHW
GGRGVRVNTL APGWFPSEMS AALLDSADGA RWIARNTMLR RAGEADELDG ALLFLASSAS
SYCTGQVLVV DGGWTAR
|
|---|
| |