Gene Franean1_3581 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3581 
Symbol 
ID5671950 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4241734 
End bp4242540 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content72% 
IMG OID641242467 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001507887 
Protein GI158315379 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.347702 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTAGCCG GGGCGGCTGG ACGAGAAGGG GTCGCTCCGA AACTCGCAGG TCGACGCGCC 
CTGATCACGG GGGCCGGTAG CGGGATCGGA CGGGCGACGG CCCTCCGGCT GGCCGCCGAC
GGAGCCGGCA TCGCGGCGGT GGATGTCGAC CTCGATGCGG CTGCCAAGGT CGCCGACGAG
GCCACCGCCC TTGGGGTCGG CGCGTTGGCG CTGTCGGCTG ACGTGGGCGA CGAGGCGGCC
GTGCGCGACG CCGTCTCGGC CGCAGTCGGC CACCTCGGCG GGCTCGACAC GGTCGTCGCT
GCCGCCGGGA TCACCCGTGC CGGCCGGACC GACGAGACCA CTCTGGACGC GTGGAACCTG
ATCATCAGGA TCAATCTGAC GGGCGTGTTC CTCACCCTGA AACACGCGCT GCCCCATCTC
TGCGCCGCGG ATGGCGGCGC CATCGTGACA ATCGGTTCGG TGGCGTCGCT GGTAGCGGCC
GGGCGGAGCT CCAGCTACGA CGCGTCGAAG GGCGGCGTAC TCCAGCTCAC CCGGGCAGTC
GCGGTGGAAT ACGCCGACCG GGGCGTACGC GCGAACTGCG TGTGTCCTGG GGTGGTCGCC
ACGAACCTGG CGGCCAACAG CCAGACGATC GCCGGCCCGC TGGACGCCGC CCGCGGCGAC
AACCCGCAAC TGCGGGTGAG CGTGCCGATG GCGCGCCACG CCGACCCCGC AGAGATCGCC
GGGGCCGTGG CGTTCCTGTG TTCCGACGAC GCCTCCTTCA TCACCGGTGC GGCGATCGCG
GCCGACGGCG GCTTCACCGC CGTTTGA
 
Protein sequence
MVAGAAGREG VAPKLAGRRA LITGAGSGIG RATALRLAAD GAGIAAVDVD LDAAAKVADE 
ATALGVGALA LSADVGDEAA VRDAVSAAVG HLGGLDTVVA AAGITRAGRT DETTLDAWNL
IIRINLTGVF LTLKHALPHL CAADGGAIVT IGSVASLVAA GRSSSYDASK GGVLQLTRAV
AVEYADRGVR ANCVCPGVVA TNLAANSQTI AGPLDAARGD NPQLRVSVPM ARHADPAEIA
GAVAFLCSDD ASFITGAAIA ADGGFTAV