Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3581 |
Symbol | |
ID | 5671950 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 4241734 |
End bp | 4242540 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641242467 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001507887 |
Protein GI | 158315379 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.347702 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGTAGCCG GGGCGGCTGG ACGAGAAGGG GTCGCTCCGA AACTCGCAGG TCGACGCGCC CTGATCACGG GGGCCGGTAG CGGGATCGGA CGGGCGACGG CCCTCCGGCT GGCCGCCGAC GGAGCCGGCA TCGCGGCGGT GGATGTCGAC CTCGATGCGG CTGCCAAGGT CGCCGACGAG GCCACCGCCC TTGGGGTCGG CGCGTTGGCG CTGTCGGCTG ACGTGGGCGA CGAGGCGGCC GTGCGCGACG CCGTCTCGGC CGCAGTCGGC CACCTCGGCG GGCTCGACAC GGTCGTCGCT GCCGCCGGGA TCACCCGTGC CGGCCGGACC GACGAGACCA CTCTGGACGC GTGGAACCTG ATCATCAGGA TCAATCTGAC GGGCGTGTTC CTCACCCTGA AACACGCGCT GCCCCATCTC TGCGCCGCGG ATGGCGGCGC CATCGTGACA ATCGGTTCGG TGGCGTCGCT GGTAGCGGCC GGGCGGAGCT CCAGCTACGA CGCGTCGAAG GGCGGCGTAC TCCAGCTCAC CCGGGCAGTC GCGGTGGAAT ACGCCGACCG GGGCGTACGC GCGAACTGCG TGTGTCCTGG GGTGGTCGCC ACGAACCTGG CGGCCAACAG CCAGACGATC GCCGGCCCGC TGGACGCCGC CCGCGGCGAC AACCCGCAAC TGCGGGTGAG CGTGCCGATG GCGCGCCACG CCGACCCCGC AGAGATCGCC GGGGCCGTGG CGTTCCTGTG TTCCGACGAC GCCTCCTTCA TCACCGGTGC GGCGATCGCG GCCGACGGCG GCTTCACCGC CGTTTGA
|
Protein sequence | MVAGAAGREG VAPKLAGRRA LITGAGSGIG RATALRLAAD GAGIAAVDVD LDAAAKVADE ATALGVGALA LSADVGDEAA VRDAVSAAVG HLGGLDTVVA AAGITRAGRT DETTLDAWNL IIRINLTGVF LTLKHALPHL CAADGGAIVT IGSVASLVAA GRSSSYDASK GGVLQLTRAV AVEYADRGVR ANCVCPGVVA TNLAANSQTI AGPLDAARGD NPQLRVSVPM ARHADPAEIA GAVAFLCSDD ASFITGAAIA ADGGFTAV
|
| |