Gene Franean1_3531 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3531 
Symbol 
ID5671901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4191208 
End bp4191942 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content63% 
IMG OID641242418 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001507838 
Protein GI158315330 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGAAAGC TTGATGGCAA GGTTGCGGTG ATCACAGGCG CGACAAGTGG TATGGCGCTG 
GCTGGTGCCA AGTTGTTCGT TGATGAAGGA GCTCATGTCT TCATTTCGGG CCGGCGGAAG
GACGCGCTGG ACGAAGCCGT CAAGCTGATC GGCCGGAACG TGACCGGCGT GCAGGCCGAT
TCGGCCGACC TCGACGATCT GGACCGTTTG TTCGAGACGG TCAAGCAGGA AAATGGCACG
GTCGACGTGT TGTGGGCAAG TGCCGGGATG GGCGAGCAGG GCAGGCTCGG CGAGATGACG
GAGGAGCACT TCGATGCCAC GTTCTCGGTG AACGCACGCG GCACGCTGTT CACGGTTCAG
AAGGCGCTGC CGCTGTTCAA CGATGGAGGC TCGATCTTCA TGACCGGGTC GAACGCTTCG
CTCCGGGGCT ACCCCGGTTG GAGTGTGTAT GCAGCGAGCA AGGCCGTGCT GCCCGCCTAC
GCGCGGGTGT GGGTATCCGA GTTGAGGGAC AGGAAGATCC GGGTGAACGT GCTGACCCCC
GGCCAGGTCG CCACGCCGAT TCTGGAGAAG GTGATGGACA CGGAGATGAA GGCGCAGTTC
GAGTCCGTGA TCCCGCGGCG AGAGATGGGC CGCCCTGAGG AGATCGCGTC GGTCGCGTTG
TTCCTCGCCT CGGACGACTC GAGCTACGTC AATGGCATGG AGCTGGTTGT CGACGGCGGC
ACCACAGTGA TCTGA
 
Protein sequence
MGKLDGKVAV ITGATSGMAL AGAKLFVDEG AHVFISGRRK DALDEAVKLI GRNVTGVQAD 
SADLDDLDRL FETVKQENGT VDVLWASAGM GEQGRLGEMT EEHFDATFSV NARGTLFTVQ
KALPLFNDGG SIFMTGSNAS LRGYPGWSVY AASKAVLPAY ARVWVSELRD RKIRVNVLTP
GQVATPILEK VMDTEMKAQF ESVIPRREMG RPEEIASVAL FLASDDSSYV NGMELVVDGG
TTVI