Gene Franean1_3409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3409 
Symbol 
ID5671780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4039538 
End bp4040437 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content69% 
IMG OID641242297 
Productintegrase catalytic region 
Protein accessionYP_001507717 
Protein GI158315209 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.603508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCGCCG CACTGATCCG ACTCCTGCCC AGAGCGCTGC GAGCGCACCG GCTGATCACC 
CCGGGGACCG TCCTGCGGTG GCACCGCCGT CTGATCACAC GGAAATGGAC CTCCTCGCGG
CGGATGGGTC AGCCACCGGT CGGCACGGAG ATCGTGACCC TCATCGAGCG GCTCGCGACC
GAGAACACGA CGTGGGGCTA CCCGCGGATC CGGGGCGAGC TCCTCAAGCT CGGTCACCGG
GTCAGCGCCT CCACGATCCG CCGGGTCCTG ACGTCCCTCG GGCTGCCCCC GGCACCGCAA
CGGCAGACCG ACACGACGTG GCGACAGTTC CTGCGCACGC AGGCGTCGAC GATGCTGGCC
GTCGACTTCT TCCACGTGGA CTGCGCGGTG ACGCTCCGGC GTCTGTACTG CTTCTTCGTC
ATCGAGGTCG GCTCCCGCAT CGTCCACATC CTCGGGGTCA CCGCCCACCC CGACGGACCG
TGGACCACCC AACAAGCCCG GAACCTGCTC ATGGATCTCG GTGACCGGGC GGCCGACTTC
CAGTTCCTGG TCCGTGACCG GGCCGGCCAG TTCACCGCGT CGTTCGACGC AGTCCTCGCC
GACGCCGGCA TCACCGCGAT CAAGATCCCA CCCCGAACCC CGCGGGCGAA CGCCTACGCG
GAACGGTTCG TCCGCACCGT CCGGACCGAG GTCACCGACC GCATGCTGAT CTTCGGCGAA
CGGCACCTGC GCACCGTCCT GGCCGAGTAC GCACGGCACT ACAACGGACG ACGACCCCAC
CGCGGTTGTG GCCTTCAACC GCCCCGGCCC GACCACCCTG TCGCAGACCT GACCAAGGAA
CGGATCAAGC GCCGACCCGT CCTCGGTGGC CTGATCAACG AATACGAACG AGCCGCCTAA
 
Protein sequence
MLAALIRLLP RALRAHRLIT PGTVLRWHRR LITRKWTSSR RMGQPPVGTE IVTLIERLAT 
ENTTWGYPRI RGELLKLGHR VSASTIRRVL TSLGLPPAPQ RQTDTTWRQF LRTQASTMLA
VDFFHVDCAV TLRRLYCFFV IEVGSRIVHI LGVTAHPDGP WTTQQARNLL MDLGDRAADF
QFLVRDRAGQ FTASFDAVLA DAGITAIKIP PRTPRANAYA ERFVRTVRTE VTDRMLIFGE
RHLRTVLAEY ARHYNGRRPH RGCGLQPPRP DHPVADLTKE RIKRRPVLGG LINEYERAA