| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3405 |
|---|
| Symbol | |
|---|
| ID | 5671776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4036943 |
|---|
| End bp | 4037629 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641242293 |
|---|
| Product | Ni/Fe-hydrogenase, b-type cytochrome subunit |
|---|
| Protein accession | YP_001507713 |
|---|
| Protein GI | 158315205 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1969] Ni,Fe-hydrogenase I cytochrome b subunit |
|---|
| TIGRFAM ID | [TIGR02125] Ni/Fe-hydrogenase, b-type cytochrome subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.788903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGTGA CCGCGCCCGC CCCGCACACC GAGCACGCGG AGCTCGTCCG GTTCCGGGTC
TGGGATCTTC CGGTCCGCCT CATCCACTGG CTGCTGGTGC TGGACCTCGT CGCCCTGTCC
GTCACCGGCT ACCTCATCGG GAACCCGGAC ATCCACCCGG GCGGCCACGT CTACTGGGTC
ACCTGGACGA GGAGCATCCA CAAGGTCACC GCGTACGTCT TCATCGCACT CATCCTGGCC
CGGGTCGGCT GGCACATCCG CTCGCCCAAC CCCTGGTCAC GGTGGACGGA GTGGATACCC
AGCACCCGGG AGCGGCTCGG CCAGATCGTC CCGTCGGTGC GCTTCTACAC GTTCCTCTCC
CGGGAGGCAC CCCCGGTCAT CGGCCACAAT CCGCTCGCCG GCCTCACCTA CACCGTGCTT
TACACGATGT TCGGGGTCGA GATCGTCACC GGTCTGGTGC TGTGGGGCGT GGAGGGCACC
GGCTGGGCGG CCTGGCTCAC CGGCTGGCTG CTCCACGTGG TGTCACTGCC GACGCTCCGG
CTCGTCCACC ACCTGATCAT GTGGCTCACC TGGGGATTCA TGATCCACCA TCTCTACAGC
GCCATCCTGG TCGACCGGGT GGAGGGCACC GGCGTCCTGA CCTCGATCTT CTCCGGCCAC
AAGTTCCTCC CGAAGGACCA CCTGTGA
|
|---|
| Protein sequence | MSVTAPAPHT EHAELVRFRV WDLPVRLIHW LLVLDLVALS VTGYLIGNPD IHPGGHVYWV
TWTRSIHKVT AYVFIALILA RVGWHIRSPN PWSRWTEWIP STRERLGQIV PSVRFYTFLS
REAPPVIGHN PLAGLTYTVL YTMFGVEIVT GLVLWGVEGT GWAAWLTGWL LHVVSLPTLR
LVHHLIMWLT WGFMIHHLYS AILVDRVEGT GVLTSIFSGH KFLPKDHL
|
|---|
| |