Gene Franean1_3310 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3310 
Symbol 
ID5671682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp3921927 
End bp3923108 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content72% 
IMG OID641242199 
Producthypothetical protein 
Protein accessionYP_001507619 
Protein GI158315111 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.408434 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCTG ACGTCATGAA CATCGAGCGC CGGGCGATCG TCTCCGGCAT CGGGCGGTCC 
CAGTCCGGCC GGAGGTTGAA CCGGCCCGCG ATCGATCTGA CCCTGGACGC CTGTCTCGCG
GCCATCGCCG ACGCGGGTCT CACCCCGCGC GACATCGACG GGCTCACCTC CTGGCCCGAC
CACCCCGCCC CGCACGGCTT CGGCGGCCCC CGGGTCGGCG ACCTGCACAC CCTCCTGCGG
CTGGACCTGT CGTGGATCCT CGGCTGCGGC GACGGCGCCA ACGTCATCGG CATCCTCGGA
ATCGCCGCCC ACGCGGTGGC CACGGGCCTC GCCCGGCATG TGCTGGTCTA CCGGACCGTC
GGGGAGGCGA CAAGCCAGGG GACCGGCCGC CGTCCGGCCG TGATGGCCGG ACCCGGGGCC
GGGGCCGCGC CGTGGAAGAC GACCTACGGG GTGGGTTCGC CCGTCCAGTT CGCCGCGCTG
TGGGCCCAGC ACCACTTCGA CCGCTACGGC ACCACCCGGG AGCAGCTCGG CTGGGTCGCC
GTGAACGACC GGCGCAACGC CGCCGACAAC CCGGACGCGA TCTACCGCGA CCCGATGACG
ATCGACGACT ACCTCGCGGC ACGGATGATC AGCGAACCGC TGTGCCTGTT CGACTGCGAC
ATCCCGGCGG ACGGGTCGAT CGCCTTCGTC GTCTCGCACG CCGACCACCG GCGCGACGTC
GACCGGCCCG TCTTCTTCGA GGCCCTCGGC GGCGGGCGGC CGATGACCTC GAGCTGGGAG
TTCTGGCCGG ACTTCGACAT CATGGCCGCG ACGAAAGCCG CCGAGCAGCT CTGGTCGCGT
ACCTCGCTGC GGCCCGCCGA CGTCGACGTC GCGGGTCTCT ACGACGGGTT CAGCATCTTC
GTCCTGCTGT GGCTCGAGGC ACTCGGCTTC TGCGGCCGCG GCGAGGCGGG CCCGTTCGTG
GAAGGTGGCA CGCGCATCGC CCGCACCGGT GATCTGCCGC TCAACACCTC CGGCGGCCAA
CTGTCAGAGG GCCGCTACCT CGGCTTCGGC CTGGCCTACG AGACCTTCCT GCAGTTACGG
AACCAGGCCG GCACCCGGCA GGTCACCGAC GCCGAGGTCG GCCTCGTCAC AGGCGGCGGC
GGCCCGCTCG CCCAGGCGTT CCTGTTCACC GGTGACCGCT GA
 
Protein sequence
MSADVMNIER RAIVSGIGRS QSGRRLNRPA IDLTLDACLA AIADAGLTPR DIDGLTSWPD 
HPAPHGFGGP RVGDLHTLLR LDLSWILGCG DGANVIGILG IAAHAVATGL ARHVLVYRTV
GEATSQGTGR RPAVMAGPGA GAAPWKTTYG VGSPVQFAAL WAQHHFDRYG TTREQLGWVA
VNDRRNAADN PDAIYRDPMT IDDYLAARMI SEPLCLFDCD IPADGSIAFV VSHADHRRDV
DRPVFFEALG GGRPMTSSWE FWPDFDIMAA TKAAEQLWSR TSLRPADVDV AGLYDGFSIF
VLLWLEALGF CGRGEAGPFV EGGTRIARTG DLPLNTSGGQ LSEGRYLGFG LAYETFLQLR
NQAGTRQVTD AEVGLVTGGG GPLAQAFLFT GDR