| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3197 |
|---|
| Symbol | |
|---|
| ID | 5671573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 3775791 |
|---|
| End bp | 3777266 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641242091 |
|---|
| Product | glucuronate isomerase |
|---|
| Protein accession | YP_001507511 |
|---|
| Protein GI | 158315003 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1904] Glucuronate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.264634 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAGGCA AGTTCGCTGG TGCAGGCAAC TCCGCCGTGT CAGGTGGCGT CACCGTGCCG
GGTGGTGGTG TCCCGCTCCG CCCGCATCCC GACCGCCTGT TCCCGGTCGA CCTGGGGGTG
CGGGCGCTCG CCCGGCGGCT GTACGAAGCC GTGCGTGACC TGCCAATCCT TTCCCCGCAC
GGTCACGTCG ACCCCTTCTT GCTGGTACAC GACGAGGCGT TCGCGGACCC GGCCAGCCTG
CTGATCACTC CGGACCATTA CGTGACCCGG CTGCTGCACG CCAGCGGGGT GCCGCTGGCG
GAGCTGGGCG TCGGACGCGG CCCGCTGCCC GAGGAACAGG CGCGAGCGGT GTGGCGCACG
TTCTGCGAGC ACTGGGCCGT GTTCCGCGGC ACCCCGGTGC GTTACTGGCT GGAATCCCAG
CTGGCCGAGA TCTTCGGTGT CACCGAACGG CCCGGTCCCG ACAGCGCGGA CCGGATCTAC
GACCAGGTCG CCGAGCGGCT CGCCGACGAG GCGTATCGAC CTCGAGCGCT GTTCCGCCGG
TTCGACATCG AGGTTCTGGC CACCACCGAC GACCCCTGCA GCGATCTCGC GGCACACCGC
GCTCTCACCG CGGATCCGGA CTGGCCCGGC CGGGTCATCC CCACCTTCCG CCCCGACCGG
TACCTGGAGC CCACCCGAGC GGGCTGGGAC GAGGCGGTGC GGCGTCTCGG CGAGGCGGCC
GACGCCGACG TCGGTGATTA CGACGGCTAC GTGCGCGCGC TGGAGGCCCG TCGCCGCTAC
TTCGCCGAGC ACGGTGCCAC GTCCTGCGAC CACAGCCATC CGGATGTCCG GACCGATCCG
CTGCCGCACG CCGAGGCCGC CAGGATCTTC CGCGCCGCTC TGGCCGGGGA GGCGAGCGAG
GCCGAGGCCA CCGCGTTCCG CCGGCACATG ATCTGCGAGT CGGCGCGGAT GTCCTGCGAG
GACGGGCTGG TGATGACGCT GCATCCGAGC GTCCGGCGCA ACCACCACAC CCCGACCCTG
CGCCGGTACG GCCCGGACAC CGGGCACGAC ATCCCGCTGC GAACCGAGTT TACTCAGGCG
CTGCAGCCGC TCCTCGATCG TCACGGCACC GATCCCGACT TCCGCCTGGT GCTGTTCACC
CTCGACGAGA CGGTCTTCTC GCGGGAGATC GCCCCACTCG CGGGCTTCTA CCCGGCGGTG
TACGTCGGCG CTCCCTGGTG GTTCCTCGAC GCGCCGGACT CCATCCGCCG CTTCCGGCGG
GCGGTGACCG AGACCGCGGG TTTCACGCGC ACCTCCGGCT TCGTGGACGA CACGCGTGCC
TTCTGCTCCG TGCCGGTCCG CCACGACATG TCCCGTCGGC TCGACTGCGG CGTGCTCGCC
GAGCTCGTCG CCGAGCACCG GCTGGAGGAG GACGAGGCCT TCGAGACCGC CGTCGAGCTG
GTGGCGGTCA GGCCGCGAGA GGCCTTCCGT CTGTGA
|
|---|
| Protein sequence | MAGKFAGAGN SAVSGGVTVP GGGVPLRPHP DRLFPVDLGV RALARRLYEA VRDLPILSPH
GHVDPFLLVH DEAFADPASL LITPDHYVTR LLHASGVPLA ELGVGRGPLP EEQARAVWRT
FCEHWAVFRG TPVRYWLESQ LAEIFGVTER PGPDSADRIY DQVAERLADE AYRPRALFRR
FDIEVLATTD DPCSDLAAHR ALTADPDWPG RVIPTFRPDR YLEPTRAGWD EAVRRLGEAA
DADVGDYDGY VRALEARRRY FAEHGATSCD HSHPDVRTDP LPHAEAARIF RAALAGEASE
AEATAFRRHM ICESARMSCE DGLVMTLHPS VRRNHHTPTL RRYGPDTGHD IPLRTEFTQA
LQPLLDRHGT DPDFRLVLFT LDETVFSREI APLAGFYPAV YVGAPWWFLD APDSIRRFRR
AVTETAGFTR TSGFVDDTRA FCSVPVRHDM SRRLDCGVLA ELVAEHRLEE DEAFETAVEL
VAVRPREAFR L
|
|---|
| |