| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3165 |
|---|
| Symbol | |
|---|
| ID | 5671542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 3730055 |
|---|
| End bp | 3730786 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641242060 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001507480 |
|---|
| Protein GI | 158314972 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.15717 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTACGT ACCCAACTTT GTGTCGCGAT GAAGGTCGAA GTGAACGGCA ACGCGTGTTG
TGTCAGACTC GAGGCATGCG GCGGGCCGGA GACCTCGACA AAGAGCCGAA ACGAATGAGT
GTTCGTCGAC GCCGGGTCAA CGACTCCCGA CGCGAGGAGC TCCTCGCCCA GCTCGAGGAC
ATCCTACTGG CCGAAGGCTT CACCGGTCTG ACGATGGACG ACCTAGCCGA ACACGCAAAC
TGCTCCAAGA CCACTCTCTA CGCCTTGGCC GACACCAAGG AGCAGCTCGT CATCATGGTG
GCCAAACGTT TCTTCGGCCG GGCGACCGAA GAGATTGAGG CAGCGGTCGA TTCGGAGAGT
GACGCGCGGC TCCGCATTGC CACCTACCTT AACGGAGTGG GTGTGGCCAT GCGCCGCCAG
TCCCCGGCTT TCTATGCCGA TATGGTCGGT TTTCGCTCCA CTGCGGAAAT CTACCGGAGG
AACTCCGACA CCGCTGCGCG TCGCGTGCGG GACATGATCG AGGAAGGTGT ACGGCAAGGT
GTTTTCCGTC CGACTGACGG CACTCTTGCC GCCCAGCTGT TAACGCTGGC GATCGACGGA
GTCCAATCGG GCATGCTGCT GCGAACCACG GGCCTGAGCG CCGGTGACGC TATTACGGAA
ATTGGTGATC TCCTATTGAA TGGGCTAAAT TCTAGAGGAC CCATACCGGT AGGGAAATCG
GACTCCAAAT AG
|
|---|
| Protein sequence | MRTYPTLCRD EGRSERQRVL CQTRGMRRAG DLDKEPKRMS VRRRRVNDSR REELLAQLED
ILLAEGFTGL TMDDLAEHAN CSKTTLYALA DTKEQLVIMV AKRFFGRATE EIEAAVDSES
DARLRIATYL NGVGVAMRRQ SPAFYADMVG FRSTAEIYRR NSDTAARRVR DMIEEGVRQG
VFRPTDGTLA AQLLTLAIDG VQSGMLLRTT GLSAGDAITE IGDLLLNGLN SRGPIPVGKS
DSK
|
|---|
| |