Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3142 |
Symbol | |
ID | 5671519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 3696450 |
End bp | 3698150 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641242037 |
Product | diguanylate cyclase |
Protein accession | YP_001507457 |
Protein GI | 158314949 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.429492 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGACG CCGCTGAGCA GATTGAGCAG GTCCCCTCAC AGACAGAACG AGAGTTGGTT AGTAGAACTC TGTTCAGGTG GGCCATCCTG GCCTGTACCG GCTATGGGGC GATCCTGCTC GTCGTGGCGG TCGTCCTCCC CGACCGGGAC GCCGCCGCAC TCATAAAGCT GTCCCGGGCT CTCGCGCTCC TGCTCGCCGG CCCGTGCTGC CTGTGGTGCG GCTGGCGTTC CCGCGGACCG GAGCGTCTCT GGCGCGTACT CATGGGAGTC GCCTGCATCG GCGCCACCGC GGGCGTCGGC GCCGCAGTCC GTTTCTCCCT GGAACACTAC CGGTACTCCG CCTGGGTTCC GCCGGTGAGC TGGATACACA TGCTCTACCT GCTACCCTAT GCGGCGGTCC TGGCAGCGCT CTTAGTGTTC CCCTCGACAC CGCTGACGGG TACTGCAGAC CGCACCTCGC ACAATGGCAG ATACTGGTAT GTGGTCAGCA TTCTGGACAG CCTGCTCGTC GTCGGATCGC TCGGCGTCCT CGTGTGGGAG ATCGGGCTCG GCGAGTTGTT CCAGGACAGG GGCGATCCGA CAGGACTGAT CGCCTTCGCG GCCAGCAACG CTATCGTCAG CGCGACCGTC GTCGTCCTGC TCGTCCTGAT CGCTACGTTT CGCCGGCCAC GGTCCCTGGC TGCGGCCACA CTACTCGCCA CGGGCCTGTT GGGAACGACC TTCAGTACCG GGGTGTACCT GGTGGCGCGG GCGAACCACA TACAGCAGTT CGACCCGATA TTACTTGTGG TTCCCGCGAC CGCTCCACTG ATAGTCGCGT TGTCCTGCCT TGTGCCGCCA CCGCGCCGGG CCGGGCCCGC CCGCCGCGTG ATCTCACGCA CCATCTGGAT ACACACGGTG CTGCCATACA TGTCGCTCGC GACGGTCGTT TTAATATTCA TTTTTCTCTG GGTTCTAGGC AGCCACCAGA TCGGATTCGG ACAGATATGC ACACTTTCTG TGCTGCTGGT GCTGGCGCTG GTCCGGCAGA TGATGACCAT GGCGGACAAC ACCCGTCTCA TTCTACAACT CCAGAACAGG GAGCGCCTAT TGCACCATCA GGCATTCCAC GACCCCCTAA CCGGCCTGGC GAACCGGCTG CTATTCACCG ACCGGCTCCA ACTGGCGCTC ACCCACTGTC TGCGCGACGG CCTACCATTC GCTCTACTCT TCTGCGACAT CGACCGTTTC AAATGGATCA ACGATAACTT CGGACATGCT GCGGGTGATG AACTGCTGAG AATCACAGCT ACACGCATGA CGAAATGCAC CCGGGTCTCC GATACGGTCG CCCGACTCGG TGGTGATGAG TTCGCTATTC TCCTGACCGG TGGAGGAGTC GGGCCGGAGA CGGTGAGCCG GCGCATCGTC GAGGCGATCC ACGCACCATG TACCATCGCC GGGCAGCCCT ACCGGGTCAA AACCAGCGCC GGCCTGGTCA TCGCCACCGA AGCAGACGGA CCGATGACGG CGGACATGCT GTTGTTTCAG GCCGACCTCG CCATGTATGA GGCCAAACGA CAAGCATCGG AAAAGCTCGT AGTATACCAG CCAGAAATGT CGCTTGAAAC CGGGTATATT TCGGCAGAAT GCCAGCAAAT GGCGGGCAGT CGCAGAAATG GCGCAAGCAG CATCGAACCG CGACGCTATC GCACCTCCTG A
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Protein sequence | MTDAAEQIEQ VPSQTERELV SRTLFRWAIL ACTGYGAILL VVAVVLPDRD AAALIKLSRA LALLLAGPCC LWCGWRSRGP ERLWRVLMGV ACIGATAGVG AAVRFSLEHY RYSAWVPPVS WIHMLYLLPY AAVLAALLVF PSTPLTGTAD RTSHNGRYWY VVSILDSLLV VGSLGVLVWE IGLGELFQDR GDPTGLIAFA ASNAIVSATV VVLLVLIATF RRPRSLAAAT LLATGLLGTT FSTGVYLVAR ANHIQQFDPI LLVVPATAPL IVALSCLVPP PRRAGPARRV ISRTIWIHTV LPYMSLATVV LIFIFLWVLG SHQIGFGQIC TLSVLLVLAL VRQMMTMADN TRLILQLQNR ERLLHHQAFH DPLTGLANRL LFTDRLQLAL THCLRDGLPF ALLFCDIDRF KWINDNFGHA AGDELLRITA TRMTKCTRVS DTVARLGGDE FAILLTGGGV GPETVSRRIV EAIHAPCTIA GQPYRVKTSA GLVIATEADG PMTADMLLFQ ADLAMYEAKR QASEKLVVYQ PEMSLETGYI SAECQQMAGS RRNGASSIEP RRYRTS
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