| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3046 |
|---|
| Symbol | |
|---|
| ID | 5671425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 3580023 |
|---|
| End bp | 3582014 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641241944 |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_001507364 |
|---|
| Protein GI | 158314856 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4779] ABC-type enterobactin transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATGCG CTGTTTCATC CGTCGGCCGA CATCGATCAG TTCTCGATCC GCGACTACCG
TCTGCCGCGC ACGGTCGTCG GGCTCGTCGT AGGCATGGCG TTGGGGGTCG CGGGGGCGTT
GATCCAGGCA TTGACGCGCA ATCCGCTGGC CGACACCGGT ATCCTCGGCG TGGGCGCGGG
TTCCTCCTTC GCGGTGACCA TGGCCGTCGG CGTGCTCGGA ATCCGCGATA TCAGTGGCTA
CATGTGGTTC GCGTTCGCCG GGGCACTGAT CGTCACGATC ATGGTCTTGC TCCTGGGATC
GACCCGACGC GGCCAGTCGC CGGGAGTCAT GGTGCTCGCC GGGGTCTGTG TCAGCGCGGT
GCTCGATGGC GCCGGGTCGG CACTTCAGCT GACCAACCCG GACGCGTTCG ATGCGATGCG
GTCGTGGACT GCCGGTTCGA TCCTGGGGCG CCCCCTCGAC GTGGTGTGGC CGGTCCTGCC
GTTCTTCGCC GTGGCGCTCA TTCTGGCCTT TGCGGTGTCG GGTCCACTCA ACGCGATGGC
TCTCGGCGAC GAGATCGCCG CCGCCCAGGG CGTCCGTCTG GCTCGTACCC GCGTCCTCGC
GATCATCGCG ATCACACTGC TCGCTGGAGG CGCGACCGCC ATCGCGGGCC CCATCGGATT
CGTCGGGCTC ATGGTGCCGC ACGTGGCCCG CTGGTTCGTC GGACCGAACC AGCGCTGGGT
CTTCGCCTAC AGCATCCTCC TCGCCCCGAG CCTGCTGCTG GCCTCCGACG TTCTCGGGCG
AATCGTCATG CGGCCCAGCG AGATCCCCGT GGGTATCGTC ACCGCCTTCA TCGGCGCCCC
CGTTCTCATC GCACTGGTGC GGCGGAAGAA GGCGAGCGGA CTATGAGTAT CGGCGTTACT
TCTCGGTCCG GACTAACGCG CCATCGCTCA ACAGGTGGGG CTCCCGGGGG GCGGCTGGAC
TTCGGGCGGC GGGTGCTGGT GCTGCGGCGA TGGAGGATCG CGGTCCGGCT CGAGTGGCGC
TCGGTCATCG TCTGCGCGGT GCTCGCGGTC GCGGTCGCCT GCATGGCGGT GCTCGCGCTG
ATGACGGGCT CGTACCAGCT CAGCCCTGGG CAGGTGGTCT CCGCGCTGGT CGGCGGGGAG
ACCGGGCTGG TCCACGACAT CGTGGTCGAG TGGCGGGCGC CCCGGGTGGT TGCGGCGCTG
GTGTTCGGTG CCGCGTTGGG GGCGAGCGGG GCGGTCTTCC AGTCGATGTT GCGCAACCCG
CTCGCTGACC CCAGCATCAT CGGATTCTCC CAGGGCTCCT ACACCGGCGC GTTGATCGTG
ATCCTCCTCA TCAACGGCAC CTACGTGCAG TTGATAGGCG GGGCGTTGCT AGGGGGGATG
GCCACCGCCA TCGCCGTGTA CGTGCTCGCC TACCGGCGAG GGGTGCAGGG GTTCCGGTTG
ATCATTGTCG GCATCGGCGT CTCGGCGATG CTCGGCTCGC TCAACACCTG GTTGATACTC
AGAGCCGACC TGGAACAGGC GATTGCAGCC GCCGCGTGGG GCGCCGGATC ACTCAACGGG
GTGTCCTGGG ATCAGGTGGC CATCGGCGGT GTGTGCATCG CTGTGCTTCT GCTGTTGGCT
GCGATGTTGA GCCGGCCGAT GCGGCAGATG GAGCTGGGTG ATGATACCGC CGCCTCCCAA
GGGGTGCGGG TCTCGCCCGC CCGCCTCGGC ATGGTCGTGG TGGGGGTGGC GTTGACGGCG
ATTGTCACGG CTGCATCGGG GCCGATCGCG TTCATCTCCC TGGTCGCGCC GCAGATCGGA
CACCGCCTTG TCCGCACTGC GGGGATAACC CTCGCACCCG CCGCCTTCGT CGGCGCGCTG
CTGTGTCTGG TGGCGGACTA CCTCGCCCAG CACGTCGCCC CAACTCCCCT GCCGGTGGGG
ATCATCACCG TCATGCTCGG CGGTGGGTAC CTCGGGTATC TGCTTTTCAC CGAAGCCAGG
AGACGCCTAT GA
|
|---|
| Protein sequence | MGCAVSSVGR HRSVLDPRLP SAAHGRRARR RHGVGGRGGV DPGIDAQSAG RHRYPRRGRG
FLLRGDHGRR RARNPRYQWL HVVRVRRGTD RHDHGLAPGI DPTRPVAGSH GARRGLCQRG
ARWRRVGTSA DQPGRVRCDA VVDCRFDPGA PPRRGVAGPA VLRRGAHSGL CGVGSTQRDG
SRRRDRRRPG RPSGSYPRPR DHRDHTARWR RDRHRGPHRI RRAHGAARGP LVRRTEPALG
LRLQHPPRPE PAAGLRRSRA NRHAAQRDPR GYRHRLHRRP RSHRTGAAEE GERTMSIGVT
SRSGLTRHRS TGGAPGGRLD FGRRVLVLRR WRIAVRLEWR SVIVCAVLAV AVACMAVLAL
MTGSYQLSPG QVVSALVGGE TGLVHDIVVE WRAPRVVAAL VFGAALGASG AVFQSMLRNP
LADPSIIGFS QGSYTGALIV ILLINGTYVQ LIGGALLGGM ATAIAVYVLA YRRGVQGFRL
IIVGIGVSAM LGSLNTWLIL RADLEQAIAA AAWGAGSLNG VSWDQVAIGG VCIAVLLLLA
AMLSRPMRQM ELGDDTAASQ GVRVSPARLG MVVVGVALTA IVTAASGPIA FISLVAPQIG
HRLVRTAGIT LAPAAFVGAL LCLVADYLAQ HVAPTPLPVG IITVMLGGGY LGYLLFTEAR
RRL
|
|---|
| |