| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3004 |
|---|
| Symbol | |
|---|
| ID | 5671387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 3534406 |
|---|
| End bp | 3535563 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641241907 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001507327 |
|---|
| Protein GI | 158314819 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.417918 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCATCGCA CCGTCTTCAA TGAGGAGCAC GAAGCCTACC GGCAGTCCCT GCGCGCCTTC
ATCGAGGCCG AGGTGGTACC CGAATTCGAC GCGTGGTTCG CCGCTGGAGA GGTGCCGCGG
GAGTTCTACT ACAAGCTGGC CAAGCTGGGC AGTTTCGGCA TCGAGGTGCC AGAGGAGTAC
GGCGGGGCTG GAATTTCCTC CCACAAGTAC ACTGCGGTCG AAACCGAAGA GATTACCCGC
GCCGGTGTCT CCTTCGGGGG TTCCAATGTG CACGTCTCGC TGTGTCTACC TTACCTGTTG
AACCTGGGCA CACCAGAGCA GAAGCGGCGC TGGCTCCCGG GGTTCGTCGC CGGCGAGTCC
ATGTTCGCGA TTGCGATGAC CGAACCGGGC ACCGGCTCCG ATCTTGCGGG CATGCGCACC
ACCGCGAAGC TTTCCGAGGA CCGCAGCCAC TATGTGCTCA ACGGGGCGAA GACATTCATC
ACCGGCGGTG TCCACGCGGA CCAAGTCATC GTCTGTGCAC GCACCGCGTC GCCGATAGAC
ACCGACCGTC GGTTCGGGAT TTCGCTACTG GTGGTGGACA CCAGGTCCGA GGGCTACTCG
GTTGGTCGCA AGCTCGACAA GCTCGGGCTG CGGGTCTCCG ACACGGCCGA GCTGGCTTTC
CAGGACGTGA AGGTGCCGGT GGAGAATCTA CTGGGGGAGG AGAACGCAGG GTTCTACTAT
CTCGGGCAGA ACCTGCCGCA GGAGCGGCTC GTGATCGCAT ACGGCGCCTA TGCACAGGCG
GCGGCCGCAG TGCGGCTCGC CAAGCACTAT GTCCAGGAGC GCAAGATCTT CGGTCAACCG
CTTTCCTCGT TCCAGAACAC CAAGTTCGAA CTGGCCGCCT GCCAGGCGGA GGTGGACGCC
GCGCAGGCGG TGGCGGACCG GGCGCTGGAG GCCCATGACG CCAATGAGCT CACCGCGGCC
GAAGCAGCAT CGGCCAAGCT GTTCTGTACC GAGACGGCGC ACCGGGTGAT CGACCGTTGC
CTGCAGTTGC ATGGCGGCTA TGGGTTTATC AACGAGTTTC CGATCGCCCG GCTGTACGCC
GACAACCGGG TGAACCGGAT CTACGGTGGA ACATCCGAGG TGATGAAGTT GATTATCGCG
AAGGATATGG GCTTGTGA
|
|---|
| Protein sequence | MHRTVFNEEH EAYRQSLRAF IEAEVVPEFD AWFAAGEVPR EFYYKLAKLG SFGIEVPEEY
GGAGISSHKY TAVETEEITR AGVSFGGSNV HVSLCLPYLL NLGTPEQKRR WLPGFVAGES
MFAIAMTEPG TGSDLAGMRT TAKLSEDRSH YVLNGAKTFI TGGVHADQVI VCARTASPID
TDRRFGISLL VVDTRSEGYS VGRKLDKLGL RVSDTAELAF QDVKVPVENL LGEENAGFYY
LGQNLPQERL VIAYGAYAQA AAAVRLAKHY VQERKIFGQP LSSFQNTKFE LAACQAEVDA
AQAVADRALE AHDANELTAA EAASAKLFCT ETAHRVIDRC LQLHGGYGFI NEFPIARLYA
DNRVNRIYGG TSEVMKLIIA KDMGL
|
|---|
| |