| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2744 |
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| Symbol | |
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| ID | 5671135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 3246372 |
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| End bp | 3248264 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641241656 |
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| Product | Type IV secretory pathway VirB4 protein-like protein |
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| Protein accession | YP_001507076 |
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| Protein GI | 158314568 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00908166 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGAC GATCCCGACG CCGCACCTCG GCGCAGGCCC CCGGCCCGTC GGCAGGGCCG
CTGGACGCCG CAGCGGCGGC CTTTGTCCCG GACGCGCTGT CGATCGCGCC CCGCCACCTG
GACGTGGGCG GGGACTTCCT TGCCACGATG GCGATCACCG GCTATCCGCG TGAGGTCCAC
GCGGGCTGGC TCGCCCCGCT GGTGACCTAC CCGGGCCGGG TGGATGTCGC GGTGCATGTC
GAGCCGATCG ACCCGGTCAC CGCGGCGAAC CGGCTCCGCC GGCAGCTGGC GAAGCTGGAG
TCCGGCCGCC AGCTCGGCGA TGAGAAGGGC CGGCTGGTCG ACCCACAGGT CGAGGCGGCG
ACCGAGGACG CCTACGACCT GTCCGCCCGC GTCGCCCGCG GCGAAGGGAA ACTCTTCAGG
CTTGGTCTCT ACCTGACCGT CCACGCGTCC AGCGAGAACG AGTTGGCTGA CGAGGTCGCG
GCGGTGCGGG CGCTCGCAGC CAGCCTGTTG CTGGATGCCA AGCCGGTCAG CTACCGGTCG
CTGCAAGGCT GGGTGAGCAC CCTGCCGCTG GGGTTGGACC AGGTGCGGAT GCGCCGCACC
TTTGACACCA CCGCCCTCAG CGCGGCGTTC CCGTTCACCT CACCTGATCT GCCGCCGCCC
GACCCGACCT CGCTGGCCCC GACCGGGGTG CTCTATGGGC TCAACGTCGC CAGCAACGGG
CTGGTGCACT GGGACCGGTT CGGGGATGTC GACAACCACA ACGCGGTCAT CCTCGGCCGC
TCAGGTGCCG GCAAGTCCTA TCTGGTCAAG CTCGAACTCC TGCGCTCGCT GTACCGGGGC
ATCGAGGTCC ACGTCGTCGA CCCGGAAGAC GAATACGCCC GGCTCGCCGC CGCGGTCGGC
GGGACCTACC TGCATCTCGG TGGCGACGGG GTACGGATCA ACCCGTTCGA CCTGCCTATT
CAGACCACTC CCGACGGCCG GCGGACCGCG CCGCGCGACG CGCTGGTGCG GCGCAGCCTG
TTCCTGCACA CCGTGATCTC CGTGCTGGTC GGAGAAATGA CGGCGGCCGA ACGGGCAGCC
CTCGACGCGG CGATCACCGC CACCTACCAG GCGGCCGGAA TCAGCTCCGA CCCGCGCAGC
TGGAACCGGC CAGCACCCCT GCTGACCGAC CTGGCCGACC TGGCCGCAAC CCTGGCCAGC
TCCACCGGCC CGGCGGCGGC GCTCGCCGCC GGGCTGTACC CCTTCACCCA GGGGGCGTTC
TCCGGCCTGT TCGACGGCCC CACCAGCGCG CCCGGCGACG GCCGCCTGGT CGTCTACTCG
CTGCGCGACC TGCCCGACGA GCTCAAAGCC ATCGGCACCC TGCTCGTCCT GGACGCGATC
TGGCGGCGGG TGTCCAACCC CGCCGACCGC CGGCCCCGCC TGGTCATTGT CGACGAGGCG
TGGCTGCTCA TGCGCCAGCC CGCCGGTGCG GACTTCCTGT TCCGGATGGC GAAGTCCTCC
CGGAAGTACT GGGCCGGGCT CACCGTCGCC ACCCAAGACA CGGCTGACGT GCTGGCCACC
GATCTCGGCC GGGCGATCGT CACGAACGCC GCCACCCAGA TCTTGCTACG GCAGGCACCG
CAGGCGATCG ATGAGATCAC CGCCGTATTT GACCTGTCCC AGGGCGAACG GCAGTTCCTT
TTGGCCGCCG ACCGCGGACA GGGACTCCTC GCGGCCGGGG CACAGCGAGT CGCCTTCCAG
TCCCTCGCCT CCGGGGTCGA ACACGCCCTG ATCACGACAA ACCCGGCCGA ACTCGCGGCA
GACACCGATG GGGCCGACGA CGGCTTCTTC GATCTCGCCA TATCAGACGA CCCGATCGAT
CCCGACGGTC AGATCTACCT CGACCCCGCC TGA
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| Protein sequence | MSRRSRRRTS AQAPGPSAGP LDAAAAAFVP DALSIAPRHL DVGGDFLATM AITGYPREVH
AGWLAPLVTY PGRVDVAVHV EPIDPVTAAN RLRRQLAKLE SGRQLGDEKG RLVDPQVEAA
TEDAYDLSAR VARGEGKLFR LGLYLTVHAS SENELADEVA AVRALAASLL LDAKPVSYRS
LQGWVSTLPL GLDQVRMRRT FDTTALSAAF PFTSPDLPPP DPTSLAPTGV LYGLNVASNG
LVHWDRFGDV DNHNAVILGR SGAGKSYLVK LELLRSLYRG IEVHVVDPED EYARLAAAVG
GTYLHLGGDG VRINPFDLPI QTTPDGRRTA PRDALVRRSL FLHTVISVLV GEMTAAERAA
LDAAITATYQ AAGISSDPRS WNRPAPLLTD LADLAATLAS STGPAAALAA GLYPFTQGAF
SGLFDGPTSA PGDGRLVVYS LRDLPDELKA IGTLLVLDAI WRRVSNPADR RPRLVIVDEA
WLLMRQPAGA DFLFRMAKSS RKYWAGLTVA TQDTADVLAT DLGRAIVTNA ATQILLRQAP
QAIDEITAVF DLSQGERQFL LAADRGQGLL AAGAQRVAFQ SLASGVEHAL ITTNPAELAA
DTDGADDGFF DLAISDDPID PDGQIYLDPA
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