| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2641 |
|---|
| Symbol | |
|---|
| ID | 5671035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 3120108 |
|---|
| End bp | 3121241 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641241557 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001506977 |
|---|
| Protein GI | 158314469 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCAG GCTGCGCCGT CATGCGGGAT CGCGACGGGC TGGAGGGGTC AGCTCGGTTG
GAGCTGGCTG CCGGGGTTCG GCTGCTTCGT GCGGACGAGG CGGTGTTGCG GGCGATGCTG
TCCGGCTGGG AGAAGCAGCA GATCGGCGGC CGGCGGCTGG ACCCGCGCAC GATCCACGCT
CGCGCCCATG TCATCACGGG GTTTGTCGCG TTTACCAATG AGTATCCGTG GCGGTGGACT
GCGGGAATGG TGGACGAGTG GTCGACGTAC CTCACCGCGG AACGCGGTCT GGCGGTGTCC
ACGGTCCGGC AGTACCAGGG ATCGTTGCGG CTTTTCTGCG ACTTCGTCAC GTCGCCGTTC
TACGGCTGGG TCGAGGAGTG CGAGACGAGG TTCGGTACGC ATCCGGTGCA GGTCTGCCAC
GAGTGGAACA CGGTGCTGCA TCTCGCGGAG TACGAGGGCC GGCCCGGTAG GCGGCCGTTG
ACTCGCGAGG AGGTGCAGCT GCTGTTCGAC TACGCCGATG ACCGGGTCGA TCAGGCCGTG
CGCCGACGCC GGAAGGGGGC GTTGCCTGCC TACCGGGACG CCACTGTCCT GAAAGTAATC
TACGGATGGG GGCTGCGCTG CAATGAGGCG TCGCGGATCG ATCTCGTGGA TTTCTACCGG
AATCCGAAAG CACCGGAGCT GGGTCGATTT GGGCTGTTGC ACGTGCGCTA CGGTAAAGGG
GCAAATGGGT CGGGTCCGCG GCGTCGGACG GTCGCGAGCG TGATGCCGTG GGCGGTGGAG
GCGGTGGAAG ACTTCGTTGA CAATGTTCGG CCCCGGATGG GCTCACGGGA GCATCCGGCG
TTGTGGGTGA CCGAGCGGGG TGGCCGGCTG AAACCTCGGG AAATCGAGGA ACGTTTCGCG
GCCTACCGCG ACGCGCTGGC GCTGCCGACA GAGTTGACAC CGCACTGCCT GCGCCATTCC
TACGTGACGC ACTTGATCGA GGACGGCGCG GACCCAAAGT TCGTACAGGA GCAGGTGGGC
CACCGGTACG CGTCCACGCT GGGGATCTAC ACCCACGTCA GCGAAGGGTT CATGAACGCC
ATGATGCGAA CGGCGCTGGA GACCGCGTTC GCGGCGGGCG GGGAGTTCCG GTGA
|
|---|
| Protein sequence | MAAGCAVMRD RDGLEGSARL ELAAGVRLLR ADEAVLRAML SGWEKQQIGG RRLDPRTIHA
RAHVITGFVA FTNEYPWRWT AGMVDEWSTY LTAERGLAVS TVRQYQGSLR LFCDFVTSPF
YGWVEECETR FGTHPVQVCH EWNTVLHLAE YEGRPGRRPL TREEVQLLFD YADDRVDQAV
RRRRKGALPA YRDATVLKVI YGWGLRCNEA SRIDLVDFYR NPKAPELGRF GLLHVRYGKG
ANGSGPRRRT VASVMPWAVE AVEDFVDNVR PRMGSREHPA LWVTERGGRL KPREIEERFA
AYRDALALPT ELTPHCLRHS YVTHLIEDGA DPKFVQEQVG HRYASTLGIY THVSEGFMNA
MMRTALETAF AAGGEFR
|
|---|
| |