| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2548 |
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| Symbol | |
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| ID | 5670942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 3028956 |
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| End bp | 3030845 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641241464 |
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| Product | Type IV secretory pathway VirB4 protein-like protein |
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| Protein accession | YP_001506884 |
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| Protein GI | 158314376 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0379852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGAC GAACCCGACG CCGCGCCTCC ATGCAGGCCC ACAGCCCGTC GACACAGCCG
GTGAACGCCG CCGCGGCGGC GTTCGTCCCG GACGCACTCT CGATCGCCCC CCGCCATCTC
GACGTCGGTG GGGACTTCCT CGCCACCATG GCCATCACCG GCTATCCCCG CGAAGTCCAC
GCCGGCTGGC TCGCCCCGCT GCTGACCTAC CCTGGCCGGG TCGACGTCGC CGTGCACGTC
GAGCCGATCG ACCCGGTCAC CGCCGCGAAC CGGCTCCGCC GGCAGCTGTC GAAGCTGGAG
TCCGGCCGCC AGCTCGGCGA CGAGAAAGGC CGGCTGATCG ACCCGCAGGT GGAGGCGGCA
ACCGAGGACG CCTACGACCT GTCCGCCCGC GTCGCCCGCG GCGAAGGCAA GCTCTTCAGG
CTTGGTCTGT ACCTCACCGT CCACGCGGGC AGCGAAACCG AGCTCGCCGA CGAGGTCGCC
GCTGTCCGTG CGCTGGCCGC CAGCCTGTTG TTGGACGCCA AACCGACCAG CTACCGGTCC
CTGCAAGGCT GGGTCAGCAC CCTGCCCTTG GGCCTAGACC AGGTACGGAT GCGCCGCACC
TTCGACACCG CAGCGTTGAG TGCTGCGTTC CCGTTCACCA GTCCGGACCT GCCGCCCGCC
GACCCCACGT CGTTGGCGGC GACCGGGGTG CTCTACGGGC TCAACGTCGC CAGCAACGGG
CTGGTGCACT TCGACCGCTT CGGCGACGTC GACAACCACA ACGCCGTGCT CTTCGGTCGT
AGCGGCGCGG GGAAGAGCTA TCTGGCCAAG CTCGAACTGT TGCGCTCGCT GTACCGGGGC
ATCGAGGTCC ACGTCGTCGA TCCCGAAGAC GAATACGCCC GACTCGCCAC CGCGGTCGGC
GCGACCTATC TGCACCTTGG CGCCGACAAC GTGCGGGTCA ACCCGTTCGA CCTGCCGATC
CAGACCACCC CCGACGGGCG GCGGACAGCA CCCCGTGACG CCCTGGTGCG CCGCAGCCTG
TTCCTGCACA CCGTCGTCGC GGTGCTCGTC GGTCAGCTGT CCGCGGCTGA ACGGGCAGTC
CTCGACGTCG CGATCACCGC CACCTACCAG ACGGCGGGGA TCAGCTCCGA CCCACGCACC
TGGAGCCGAC CGGCACCGCT GCTGGCCGAC CTCGCCACGA CCCTGGCCGC CTCCGACGAC
CCGGCGGCAG TGACCCTCGG TGCCCGGCTG CACCCGTACA CGGCAGGGGC GTTCTCCGGC
CTGTTCGACG GCCCTACCAG TGCGCCTGGC GACGGCCACC TCGTCGTCTA CTCCCTGCGC
GATCTGCCCG ACGAACTCAA AGCCATCGGC ACGCTGCTCG TCCTCGACGC CGTGTGGCGG
CGGGTGTCCA ACCCCGCCGA CCGCCGACCC CGCATGGTCG TGGTCGACGA GGCGTGGCTG
CTGATGCGCC AACCGGCCGG TGCGGACTTC CTGTTCCGGA TGGCCAAGAG CGCGCGGAAG
TATTGGGCCG GGCTGACCGT CGCGACCCAG GACACCGCCG ACGTGCTCGC CACCGACCTG
GGCAAGGCGA TCGTCACGAA CGCCGCCACC CAGATCCTGC TGCGCCAGGC ACCGCAGGCG
ATCGACGAGA TCACCGCCGT GTTCGACCTG TCCCAGGGCG AACGGCAGTT CCTGCTCTCC
GCCGACCGCG GACAGGGACT CCTCGCGGCG GGGGCACAGC GGGTCGCCTT CCAGGCCCTG
GCCTCGCCCA GCGAGCACCG CCTGGTCACG ACCAACCCCG CCGAACTCGC CGCCGACCCC
GACGAGGCCG GCGACGACGG CTTCTTCGAC CTCGCCGCGC CCGCTGGCCC GGCCGATGAC
GACGGCCAGA TCTACCTCGA CGCCGCCTGA
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| Protein sequence | MSRRTRRRAS MQAHSPSTQP VNAAAAAFVP DALSIAPRHL DVGGDFLATM AITGYPREVH
AGWLAPLLTY PGRVDVAVHV EPIDPVTAAN RLRRQLSKLE SGRQLGDEKG RLIDPQVEAA
TEDAYDLSAR VARGEGKLFR LGLYLTVHAG SETELADEVA AVRALAASLL LDAKPTSYRS
LQGWVSTLPL GLDQVRMRRT FDTAALSAAF PFTSPDLPPA DPTSLAATGV LYGLNVASNG
LVHFDRFGDV DNHNAVLFGR SGAGKSYLAK LELLRSLYRG IEVHVVDPED EYARLATAVG
ATYLHLGADN VRVNPFDLPI QTTPDGRRTA PRDALVRRSL FLHTVVAVLV GQLSAAERAV
LDVAITATYQ TAGISSDPRT WSRPAPLLAD LATTLAASDD PAAVTLGARL HPYTAGAFSG
LFDGPTSAPG DGHLVVYSLR DLPDELKAIG TLLVLDAVWR RVSNPADRRP RMVVVDEAWL
LMRQPAGADF LFRMAKSARK YWAGLTVATQ DTADVLATDL GKAIVTNAAT QILLRQAPQA
IDEITAVFDL SQGERQFLLS ADRGQGLLAA GAQRVAFQAL ASPSEHRLVT TNPAELAADP
DEAGDDGFFD LAAPAGPADD DGQIYLDAA
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