| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2448 |
|---|
| Symbol | |
|---|
| ID | 5670844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 2908699 |
|---|
| End bp | 2910624 |
|---|
| Gene Length | 1926 bp |
|---|
| Protein Length | 641 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641241365 |
|---|
| Product | serine/threonine protein kinase with PASTA sensor(s) |
|---|
| Protein accession | YP_001506786 |
|---|
| Protein GI | 158314278 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0505628 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCGT GCCGCAGCGC CGAGGATCCA GTCACCGCGC CCGGCGGCCA GCCCGCCGCC
GGCCCGCTGC GGCCTGACGA TCCCTCCGAG CTGGGGCACT ACCGCGTTCT CGGGCGGCTC
GGCGAAGGCG GGATGGGCAC CGTCTTCCTC GGCGCCGCCC CCGACGGGCG GCCGGTCGCG
ATCAAGATGA TCCGGGCGGA GGTGGCCGGC GTGCCCTCGT TCCGCGCGCG CTTCCGCCGG
GAGGCCGAAC TCGCCCGCCG GGTGGCCCGG TTCTGCACCG CCGAGCTGCT GGACGCGGTC
GACCCGCCCG ACGGGCCGCC CTTCATCGTC ACCGAATTCG TGGACGGGCC CACGCTCGCC
GCCGCGGTCG CGGCCGGTGG CCCGCTCGGC GCCGCCGACC TCGAGCGGGT GGCGGTCAGC
GTGGCCGCGG CGCTGACCGC CATCCACGGC GCCGGTCTGG TCCACCGTGA TCTCAAGCCG
GCGAACGTCC TGCTGTCGCC CCTGGGGCCG CGCGTCATCG ACTTCGGGAT AGCCCACGCG
GCGGACATCA CGCACGTCAC CCGGGACTCG ATCGTCGGAA CGCCGGCATT CATGGCCCCC
GAGCAGGCGC TGGCGCAGCC GGTGTCCGGC GCGGCCGACG TGTGGGCCTG GGCCGGCCTG
GTCACCTTCG CCGGAACCGG CCGGCCGCCG TTCGGTGACG GCCCACCCGA GACACAGATC
TTCCGGATCG TCCACGGCGA CCCGAACCTC GACGGGCTGG ACCCGGCGCT GGGCGCCGTC
GTCCGGCGGG CGATGAGCCG GCAGCCCACG GACCGTCCCA CCGCGCAGGA CCTGCTGCAG
CAGCTGGTCA CCCTCGGCGT CGAGGTCCCG GCTTCGGCGA CATCCGCACT CGCGCTCCCC
GCGGCGGACG GCGGTGCGCC GCCCCAGGGT CGGACACCCG CGAGCGACCC GATCCCGCCC
ACCAGCCCAG CCGGCCCGTC CGGCTCACCC AGCGCGGCCC GGCGGACGCG ACCGGAGCGC
CGGCCGTCCG GACGCATGCT CGTCGCCGCG CTGGCCGGGG TCGTCGTCGT CCTGGTCGGC
GCCTGGCTAC TGCTTCAGGC ACAGCCGCCG GACGGCCGTG ACGACACCGA TACCCGGGTA
AGCGCCGCTT CCGCTTCAGG CGACCCCACC GGTCCGTCGG ACGGCCAGTC GCCGGGAAGC
GGGGAGGCAA GCCCGGGCAC CGCGACGGCC ACCGGGCCCG GACCGGGCGG GACCGCCAGG
GAGGTCACAC CGCCCGGCGA GCCCGTCGAG ATCCCGGACG TCGTCGGTCG GCCGGTCACC
GAGGCGGAGG AGGCGCTCCG CACCGCCGGG CTGACGAACA TCATCCGCAC CACGCGGCTC
GACGACCGGC CCGCGGGCTC CGTCATCGGG ATGCACCCCG CAGCGGGCAG CGAGGTGAGC
CGGGACGCGG CGATCGAGCT CGACGTGTCC GACGGGCCGG GGCACACCAC CGTCCCCGAC
CTCGTCGGGC GGTCGGAGGT GGACGCCCGC TCCGGGCTGT ACAGCGCCGG CCTGGTGATG
GTCGTCCAGG AGAACAGCGG GCCGTCCAAG GTCGGGCCGG GGCTGGTGGA GCGGACCGAC
CCACCGGGCG GGACCCAGGT CGCCTACGGC ACGACTGTGA CGATCAGCGT CGCGAGCCGG
CAGGTCGCCG TTCCCGACGT GGTCGGCCAG AGCGCCGCCG CGGCCACCGC GACGCTGCGG
GACTACGGCT TCGACGTCGT CGAGGAGCGC GGCGCAGGCT CCCAGCCGGC CGGAGTCGTC
ATCGCCCAGC TGCCGCGGGC GGGCCTCGTC ACCCGGGGGG CGACCGTCAC GATCACCGTG
AGCCAGCCCC GGTCGAACGG CGACTCGCAG GTCGCGCAGA CTCCGGAGCC ACCTCCAGTC
CCCTGA
|
|---|
| Protein sequence | MDACRSAEDP VTAPGGQPAA GPLRPDDPSE LGHYRVLGRL GEGGMGTVFL GAAPDGRPVA
IKMIRAEVAG VPSFRARFRR EAELARRVAR FCTAELLDAV DPPDGPPFIV TEFVDGPTLA
AAVAAGGPLG AADLERVAVS VAAALTAIHG AGLVHRDLKP ANVLLSPLGP RVIDFGIAHA
ADITHVTRDS IVGTPAFMAP EQALAQPVSG AADVWAWAGL VTFAGTGRPP FGDGPPETQI
FRIVHGDPNL DGLDPALGAV VRRAMSRQPT DRPTAQDLLQ QLVTLGVEVP ASATSALALP
AADGGAPPQG RTPASDPIPP TSPAGPSGSP SAARRTRPER RPSGRMLVAA LAGVVVVLVG
AWLLLQAQPP DGRDDTDTRV SAASASGDPT GPSDGQSPGS GEASPGTATA TGPGPGGTAR
EVTPPGEPVE IPDVVGRPVT EAEEALRTAG LTNIIRTTRL DDRPAGSVIG MHPAAGSEVS
RDAAIELDVS DGPGHTTVPD LVGRSEVDAR SGLYSAGLVM VVQENSGPSK VGPGLVERTD
PPGGTQVAYG TTVTISVASR QVAVPDVVGQ SAAAATATLR DYGFDVVEER GAGSQPAGVV
IAQLPRAGLV TRGATVTITV SQPRSNGDSQ VAQTPEPPPV P
|
|---|
| |