| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2370 |
|---|
| Symbol | |
|---|
| ID | 5670766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 2813959 |
|---|
| End bp | 2814399 |
|---|
| Gene Length | 441 bp |
|---|
| Protein Length | 146 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641241287 |
|---|
| Product | alkylhydroperoxidase |
|---|
| Protein accession | YP_001506708 |
|---|
| Protein GI | 158314200 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0155625 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.106915 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGCA TGGACATGGC GAGCGTCGTA CCGAACGCCT ACAAGGCGGT GATGGGCCTG
GAGAAGTACG TCCGGTCGAC CGTCGACGGG ACCGTGCTGG AACTGGTGAA GCTGCGCGCG
TCGATCCTGA ACGGCTGCGC GTTCTGCGTG GACATGCACA GCCGCGACGC GCTCGCCGCC
GGCGAGTCGA GTCGGCGGCT GTTCGCGGTC GCCGCCTGGC ACGAGTCGCC CTTCTTCAGC
GAGAAGGAGC GGGCGGCGCT CGCACTGACC GACGCCGTCA CCCGGCTCGG CCAAGACGGC
GTCCCCGACG ACGTGTGGGA CGGCGCGACG AAGGTCTGGA GCGAGGAGGA GGTGGCGAAC
CTGGTGGTCG CCATCGCGAC GATCAACGTC TGGAACCGCG TCGCGATCTC GACCCGCACC
CAGCCTCCCG CGACGGTCTG A
|
|---|
| Protein sequence | MQRMDMASVV PNAYKAVMGL EKYVRSTVDG TVLELVKLRA SILNGCAFCV DMHSRDALAA
GESSRRLFAV AAWHESPFFS EKERAALALT DAVTRLGQDG VPDDVWDGAT KVWSEEEVAN
LVVAIATINV WNRVAISTRT QPPATV
|
|---|
| |