Gene Franean1_2270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_2270 
Symbol 
ID5670669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp2712140 
End bp2712778 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content74% 
IMG OID641241190 
ProductSCP-like extracellular 
Protein accessionYP_001506611 
Protein GI158314103 
COG category[S] Function unknown 
COG ID[COG2340] Uncharacterized protein with SCP/PR1 domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00083862 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0734842 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGACAG CAAGCACGAG CACGTCACCC ACGGCCACGC CGACGTCGTC GGTGCCGCCC 
ACTGTGACAC CGCCCCCGTC GACACCGACG GCGGCGCCCA CCACCACGGA TCCCACACCG
CCGGCGCCGA CCACGGCACC GCCGTCCACC CGGCCGCCGC GACCGCCCCG GCCGACCGAT
CCGCCCGGGC CGGCCGATCC GCCGGTTCCC ACGAACCCGC CGGTCACGTC CGCTCCGCCG
GCCCCGCCGG GGACGAGCCC TCAGGCCGAC GAGGTCGTCC GGCTCACCAA CGTCGAACGC
GAGAAGGCCG GCTGCGGGCC GCTCGCCGTC GACACCCGTC TCACCGCCGC GGCGCAGGCG
CACACCGCGG ACATGGCCGC GAACGACTAC TTCAGCCACG ACGGCCAGGA CGGCAGCTCG
CCGGGTGACC GGACCAGGGC GGCCGGCTTC CCCTCGGGCT TCGTCGGCGA GAACATCGCC
GCCGGGTCGA CCACGCCGGC CGCGACCCTC CAGATGTGGA TGAACAGCTC GGGGCACCGC
GCGAACATCC TCAACTGCGA CTACACCCAC ATCGGCGTCG GCTACGCCCA GGGCGGCTCG
TACCGCTACT ACTGGACGCA GGACTTCGGG AAGCTCTGA
 
Protein sequence
MPTASTSTSP TATPTSSVPP TVTPPPSTPT AAPTTTDPTP PAPTTAPPST RPPRPPRPTD 
PPGPADPPVP TNPPVTSAPP APPGTSPQAD EVVRLTNVER EKAGCGPLAV DTRLTAAAQA
HTADMAANDY FSHDGQDGSS PGDRTRAAGF PSGFVGENIA AGSTTPAATL QMWMNSSGHR
ANILNCDYTH IGVGYAQGGS YRYYWTQDFG KL