Gene Franean1_2256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_2256 
Symbol 
ID5670655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp2695649 
End bp2696824 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content70% 
IMG OID641241176 
Productarabinogalactan endo-1,4-beta-galactosidase 
Protein accessionYP_001506597 
Protein GI158314089 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3867] Arabinogalactan endo-1,4-beta-galactosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.020335 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGGCG GCACCGTGCG CGTGATCCAC ATCGTGAGCC TGATCGCCGC CGCCGGTACG 
GTGGCGGCGA TGGTCACCGT CCTGCTCGGG CGCGACAGGC CGTCACGCGA GGCCCTCGGC
GTCCGGGGCG CAGACATCTC GTTCACGCTC CAGGAGGAGG CCGCTGGGAC CAGCCTCTCC
GATGGCGGGC GACGCCTCCC CGTCGAGCGG ATCCTCGCGG CGCACGGCGC GAACTACGTC
CGGCTGCGGG TCTGGGTCGA TCCGCCCGCC GGATACAGCG ACGAGCAGTC TGTCCTCACC
CTGGCACGCC GCGCGACGGA CGCGGGGCTC AGAATCATGC TTAATCCGCA CTATTCCGAC
TTCTGGGCCG ACCCGCATTC CCAGGAGATC CCGGCGGCGT GGCGTGGCGC CGATCTCGTG
ACGACGGCAG CGAAGGTCCG GGAATACACA CGCGGTCTGG TCGCCAAACT GGCGGCGCAG
GGAACGCCCG TCGACATGGT TCAGATCGGC AACGAAATCA CCAACGGGAT GCTCTGGCCG
CTCGGCGATG TTCGGGACGG CACGCGAACA CAGTGGTCAC GCCTCGCGGA ACTGGTCAAC
AGCGCGATCG AGGGTGCCCG CGAAGGCGCC TCGGGCCGGC CCGTGGACAT CGTCCTCCAC
GTCGACAGCG GGGGCGACCT CGGCCGCTCA GAGTATTTCT TCGGCAACCT CATGCAGGCG
GGCGTCACCG CGTTCGACGT CATCGGGGTG AGTTACTACC CGTACTGGAA CGGCTCGCTG
GCGACGCTGC GGGCGACGCT CGACGGCCTG GCACGGCAGT ACCACCGGGA CATCCTCATC
GTGGAGACCG CGTATCCGTG GACGTTGGGT GATCCCGGGC CGGGCGACTG GGTCACGTCC
CCCGACCAGC TACCGGACGC CGTGACAGTG CCCGCGACGC CGGCCGGGCA GGCAGCCTTC
TTCGCCGAGT TGCGGCAGAT CCTCCACGAC GTGCCGGACG GTCGAGGCCT GGGGTTCCTC
GCCTGGGAGC CCGGCTGGCT CACAGTGGCC CCGAAACCCG GCGAGCCGAT CCCCGGAGCG
AACCTCGCGA TGTTCGACCG GGACGGAGTC GGGCTGCCCA GCCTCGCCGC GTTCGCACCC
CCCGACGCCG CCGGCTCGGC GCTGGCGGGT CGATGA
 
Protein sequence
MRGGTVRVIH IVSLIAAAGT VAAMVTVLLG RDRPSREALG VRGADISFTL QEEAAGTSLS 
DGGRRLPVER ILAAHGANYV RLRVWVDPPA GYSDEQSVLT LARRATDAGL RIMLNPHYSD
FWADPHSQEI PAAWRGADLV TTAAKVREYT RGLVAKLAAQ GTPVDMVQIG NEITNGMLWP
LGDVRDGTRT QWSRLAELVN SAIEGAREGA SGRPVDIVLH VDSGGDLGRS EYFFGNLMQA
GVTAFDVIGV SYYPYWNGSL ATLRATLDGL ARQYHRDILI VETAYPWTLG DPGPGDWVTS
PDQLPDAVTV PATPAGQAAF FAELRQILHD VPDGRGLGFL AWEPGWLTVA PKPGEPIPGA
NLAMFDRDGV GLPSLAAFAP PDAAGSALAG R