Gene Franean1_2235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_2235 
Symbol 
ID5670634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp2672224 
End bp2672616 
Gene Length393 bp 
Protein Length130 aa 
Translation table11 
GC content77% 
IMG OID641241155 
Productpeptide ABC transporter ATPase 
Protein accessionYP_001506576 
Protein GI158314068 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.61872 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00557784 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACGGGCG CGACCGCCGA GACCGGCGCA GGCGCAGGCA CCACTGCCAC CCACGCCGGC 
GGAACGCGGC CCGTGGACGC CGCTGCCGTC GCACCGCTGC TGCGCGCGGT CGACCTGCAC
AAGCGCTACG GCGCCACACC CGCGCTCGCC GGGGCGTCCA TCGAGATCCG GGCGGGTGAG
GTCGTCGCGC TGATGGGCCC GTCCGGGGCG GGCAAGTCGA CGCTGCTGCA CTGCCTGGCC
GGGATCGTCG GGCCGGAGCG CGGGCATGTG CGCTACCGCG ACCGGGTGAT CTCCGGGATG
TCCGACGCCG GGCGCTGGCG GCGCTGGCCG CGGTGGGCGC GCGGCGGCGC ACCGTGGCCG
GGTGGGTGCT GTGGCAGACG GCCATCCCGA TGA
 
Protein sequence
MTGATAETGA GAGTTATHAG GTRPVDAAAV APLLRAVDLH KRYGATPALA GASIEIRAGE 
VVALMGPSGA GKSTLLHCLA GIVGPERGHV RYRDRVISGM SDAGRWRRWP RWARGGAPWP
GGCCGRRPSR