| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2230 |
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| Symbol | |
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| ID | 5670629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 2668160 |
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| End bp | 2668876 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641241150 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001506571 |
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| Protein GI | 158314063 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.024265 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0061856 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGTCGAGA ACGAAGGTCG AGTCGCACTG GTGACCGGTG GCAACCGCGG GATCGGCGCC
GCGTGCGCGG CGGCGCTCGC GGCCTCGGGC GACCGGGTGG CCGTGGCCAG CCGCGGTGGC
GAGGCACCCG ACGGGATGCT CGGGGTGCGG ATGGATGTCA CCAGCGCGAA CAGCGTCGAC
AAGGCGTTCA GCGAGGTCGA GGCCGCGCTC GGCCCGGTCG AGATCGTCGT GTCCAACGCC
GGCATCGTGC GCGACACGCT GATGCTCATG ATGTCGGAGG ACTCCTTCCG CGACGTCGTC
GACACCAACC TGCTCGGGGC CTACCGGGTG GCGAAGCGCG CGTCGCGCTC GATGATCCGG
CGCCGCAACG GTCGGCTGAT CTTCATCTCG TCGGTGGTGG GGCTCTCCGG CGGTCCGGGG
CAGTCGAACT ACGCCGCCTC CAAGGCGGGC CTGGTGGGTT TCGCCCGGTC GCTGGCACGC
GAGCTCGGCG GCCGCGGGAT CACCTCGAAC GTGATCGCCC CGGGTCCGAT CCGCACGGAC
ATGACGGACG CGCTCACCGA CGCCCAGCGC GAGTTCCTCG TCGCCGCCAC CCCCGCCGGA
CGGATGGGCG ACCCCGCGGA GGTCGCCGCG GCGGTGGTCT TCCTCGCGTC GCAGGGCGCC
GCGTATGTGA ACGGCGCGGT CATCCCGGTC GACGGTGGCG CCGGCATGGG CCACTGA
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| Protein sequence | MVENEGRVAL VTGGNRGIGA ACAAALAASG DRVAVASRGG EAPDGMLGVR MDVTSANSVD
KAFSEVEAAL GPVEIVVSNA GIVRDTLMLM MSEDSFRDVV DTNLLGAYRV AKRASRSMIR
RRNGRLIFIS SVVGLSGGPG QSNYAASKAG LVGFARSLAR ELGGRGITSN VIAPGPIRTD
MTDALTDAQR EFLVAATPAG RMGDPAEVAA AVVFLASQGA AYVNGAVIPV DGGAGMGH
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