Gene Franean1_2188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_2188 
Symbol 
ID5670588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp2621051 
End bp2622214 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content70% 
IMG OID641241109 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001506530 
Protein GI158314022 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.130468 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACCCGA ACTTCGACAC CTACCGGCTC ACCGACACCC ACGTCGCCGT GCGCGAGGCG 
GTGCGCGATC TCGCCGAGAA GGAGATCGCC CCGTTCGCCG CCGACGCCGA CGAGAACGAG
CGCTACCCCG TCGAGGCCCA CAACGCGTTG GTCCGTTCCG GGTTCAGCGC CGTACACATC
CCGGAGAGCT ACGGCGGCCA GGGCGCCGAC TCGGTGACGA CCTGCATTGT CATCGAGGAG
GTGGCCCGGG TCTGTGCCTC CTCGTCCCTC ATTCCGGCGG TCAACAAGCT CGGCACCATG
CCGATCCTGC TGTCCGGCTC GGAGGATCTG AAGAAGCTGG TCCTGCCCTC CATCGCCAGC
GGGGAGGCGA CCGCCTCCTA CGCGCTCTCG GAGCGGGAGG CCGGCTCCGA CACCGCGTCC
ATGCGCACCC GGGCGCACCT CGACGGCGAC CACTGGGTCC TCAACGGCAC GAAGACCTGG
ATCACCAACG CCGGCGAGTC CCTCTGGTAC ACCGTCATGG CCGTGACCGA CCCGAACGCG
GCGAAGCCGG CCAACGGCAT CTCGGCGTTC GTCGTCCGGG CCGACGACCC CGGCTTCGAG
GTCGGCTCGA AGGAGCGCAA ACTCGGCATC AAGGGCTCCC CCACCCGAGA GATCCACTTC
GTCAACTGCA CGATCCCCGC CGACCGCATC ATCGGCGAGC CCGGCACCGG CCTGCGCACC
GCCCTGGCCA CCCTCGACCA CACCCGGCCC ACAATCGGCG CCCAGGCCGT CGGCATCGCC
CAGGGCGCGC TGGACGCGGC GATCGGCTAC GTCCGTGAGC GCCGCCAGTT CGGCCGCGCG
ATCGCCGACA ACCAGGCCGT CCAGTTCATG CTCGCCGACA TGGCGATGAA GATCGAGGCC
GCCCGGCACA TGGTGTACGT GGCCGCGGCC CGCGCCGAGC GCGGCGAGCC GAACCTCGGC
TTCATCACGG CCGCGGCGAA GTGCTTCGCC TCGGACGTCG CCATGGAGGT GACCACCGAC
GCCGTCCAGC TCTTCGGCGG CGCCGGCTAC ACCCGTGACT TCCCGGTCGA GCGGATGATG
CGCGACGCAA AGATCACCCA GATCTACGAG GGCACCAACC AGATCCAGCG CGTCGTGATG
TCCCGCGCCC TGCTCAAGGG CTGA
 
Protein sequence
MDPNFDTYRL TDTHVAVREA VRDLAEKEIA PFAADADENE RYPVEAHNAL VRSGFSAVHI 
PESYGGQGAD SVTTCIVIEE VARVCASSSL IPAVNKLGTM PILLSGSEDL KKLVLPSIAS
GEATASYALS EREAGSDTAS MRTRAHLDGD HWVLNGTKTW ITNAGESLWY TVMAVTDPNA
AKPANGISAF VVRADDPGFE VGSKERKLGI KGSPTREIHF VNCTIPADRI IGEPGTGLRT
ALATLDHTRP TIGAQAVGIA QGALDAAIGY VRERRQFGRA IADNQAVQFM LADMAMKIEA
ARHMVYVAAA RAERGEPNLG FITAAAKCFA SDVAMEVTTD AVQLFGGAGY TRDFPVERMM
RDAKITQIYE GTNQIQRVVM SRALLKG