| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2157 |
|---|
| Symbol | |
|---|
| ID | 5670557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 2585966 |
|---|
| End bp | 2587519 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641241078 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001506499 |
|---|
| Protein GI | 158313991 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2006] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0332919 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAC GCCAGGAAAT AGACCGTGGA GTGCCGTACA ACATCCGAGA CAAAACCCAT
CAGGTGGCTT TTACCCGCAC CGCGGCCGCG GCCTACCCAT CGAACGCCCC TTTCTCTCCG
GACACGTCCT ATCCGGAGTA CGACCTGGGC CACGTCAACG ACGAACCTAA TCCGGTGTAC
GCTGCCGTGC GCACGGTGCT CCGCCTGGCC GGGCTCGATC CGACGGCGGT CGACACGTCC
TCCTGGAACC CACTCGGCGA TCTGGTCGCC TCAGGTGGCA CCGTGGTGGT CAAACCCAAC
CTCGTACGCG AATCCCATCC CCGGGCTTCC GCAGGATGGA AGTGGGTGCT CACCCACGGC
TCCGTGATTC GGGCAGTAGC CGACTACGCT TTCCTGGCGG TAGGCCGGTC AGGACGGGTC
GTCGTGGCGG ACGCACCCCA GACCGATTCG TCATTTGCCG CGATTTCCAC CGTTCTCGGG
CTCGACCAGT TGAGCCGGTT CTATCTGGAC CGCGGATTGC AGTTCGAGCT CGTCGACCTG
CGCCAGGAGG AATGGACAAC GCGTGGCGAC GTCGTCGTGG CGCGCCACCG ACTCACCGGG
GACCCAGCTG GTGCCGTCGC CTTCGACCTC GGACACTCGA GCGAGTTCGT CGATCACGGA
GGATCGGGCC GCTACTACGG TGCCGACTAC GACTCACGGG TGGTCAATGA ACACCATTCC
GGAGGCCGCC ACGAGTACCT GCTCTCCGGG ACGGTTATGA ACGCAGATCT CATCATCAAC
ATACCCAAGC TTAAAAGCCA CAAGAAAGCC GGGATCACAC TCGGCATGAA GAACCTGGTC
GGTGTGAACG CGGACAAGAA CTGGTTGCCT CATCATACTG AAGGCTGGCC CGGAAACAAC
GGCGACGAGC ATCCTCGAGC CGACACGCGA CACCGCATTG AACGGAAGGC CGTGGCGGGC
CTACGTCGAG CCGCGCTGGC CTGGCCTCGA GTCGGCGGAC ATGTCATGCG TCTCGCCCGG
CAGGGCGGCA CACATGTCTT CGGTGACGGC GACACGGCCA TCCGCAGTGG CAACTGGTGG
GGCAACGACA CGGTCTGGCG AATGTCCCTC GACCTCAACA AGATCGTCAT GTACGGCCGG
GCGGACGGAA CGCTCTCCTC TCAGCCCACC GCACGCCGTC ATGTGGTGCT GGTGGACGGT
GTCATTGCGG GACACCGAAA CGGACCGCTG AACCCCGACG CGATCCCTGG TCGGCTTTTG
GCCTTCGGGC GCACGCCGGC CGCAGTGGAC GCCGCCACCA CCTACCTGTT CGGCTTCGAT
CCGGACCGGA TTCCGACTGT TCGACAGGCT TTCATATGCC GCCACCTCCC CCTGGCAGCA
GGGGACTGGC GCGACATCGA ACTGGTCGGA GACGACGAGA ATTGGTGTGG TCCGCTCAGT
TCCCTGGCCG CGGGGGTGAC CTTGCTCGCC GAGCCGCACT TCGCGTGGAA GGGCCGGGTG
GAACTCGTTC CAGCCCACGA TCATGCGGGA AACCCACGGG TAGGTACGAC ATGA
|
|---|
| Protein sequence | MTERQEIDRG VPYNIRDKTH QVAFTRTAAA AYPSNAPFSP DTSYPEYDLG HVNDEPNPVY
AAVRTVLRLA GLDPTAVDTS SWNPLGDLVA SGGTVVVKPN LVRESHPRAS AGWKWVLTHG
SVIRAVADYA FLAVGRSGRV VVADAPQTDS SFAAISTVLG LDQLSRFYLD RGLQFELVDL
RQEEWTTRGD VVVARHRLTG DPAGAVAFDL GHSSEFVDHG GSGRYYGADY DSRVVNEHHS
GGRHEYLLSG TVMNADLIIN IPKLKSHKKA GITLGMKNLV GVNADKNWLP HHTEGWPGNN
GDEHPRADTR HRIERKAVAG LRRAALAWPR VGGHVMRLAR QGGTHVFGDG DTAIRSGNWW
GNDTVWRMSL DLNKIVMYGR ADGTLSSQPT ARRHVVLVDG VIAGHRNGPL NPDAIPGRLL
AFGRTPAAVD AATTYLFGFD PDRIPTVRQA FICRHLPLAA GDWRDIELVG DDENWCGPLS
SLAAGVTLLA EPHFAWKGRV ELVPAHDHAG NPRVGTT
|
|---|
| |