| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2129 |
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| Symbol | |
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| ID | 5670529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 2557715 |
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| End bp | 2558944 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641241050 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001506471 |
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| Protein GI | 158313963 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGCGTA ACCTGGGTCG ATCCCGAGAA GGAAGTGACG AGATTCCGCC CATGAGTCCT
ACCGTCCTAC CCCGCGAGGC CCAGGTGGAC GAGGTCAAGG ACCTCATCAC CCGTGGCAAG
GAGATCGGTT TCCTCACCAC CGAGGACGTC ACGGTCGCGA TTCAGGCGGC CGAGCTGCCC
CCCGAGCAGG CCGAGACCGT CCTGCAGGTG CTCAACGACG AGGGCATCGA GGTTCTCGAG
GCCGGGGGGG AGAACGCCGA CGAGGCGGAT CTGCTGGCCC GTCGCCGCCG CGAGGAGGAG
GAGCTCGCGC TCAAGGCGCC GACCTCCGAC CCGGTGCGGA TGTACCTCAA GGAGATCGGC
AAGGTACCGC TGCTCACCGC GGAGGAGGAG GTCGACCTCG CCAAGCGGAT CGAGGCGGGC
CTGTTCGCCT CCGAGAAGCT CGCGGTGGCG ACGAAGAAGA CCTCCCCGCA GATGCGGCGG
GATCTCGAGG CCATCGAGCG GGACGGTCAG ATCGCCAAGC GGAAGCTCGT CGAGGCGAAC
CTGCGGCTCG TCGTCTCGAT CGCCAAGCGC TACGTGGGGC GCGGGATGCT CTTCCTGGAC
CTCATTCAGG AGGGCAACCT CGGCCTCATC CGCGCGGTCG AGAAGTTCGA CTACACCAAG
GGCTACAAGT TCTCCACCTA CGCCACCTGG TGGATCCGGC AGGCCATCAC CCGCGCCATC
GCGGACCAGG CCCGGACGAT CCGCATCCCG GTGCACATGG TCGAGACGAT CAACAAGCTG
ATCCGCATCC AGCGCCAGCT CCTGCAGGAC CTCGGCCGGG AGCCGAGCCC GGAGGAGATC
GCCAAGGAGA TGGACCTCAC GCCCGACAAG GTGCGGGAGA TCCTCAAAGT GTCGCAGGAG
CCGGTCTCCC TGGAGACGCC GATCGGTGAG GAGGAGGACT CCCACCTCGG CGACTTCATC
GAGGACTGCG ACGCGGTCGT CCCGGTCGAC GCCGCCAGCT TCATCCTCCT GCAGGAGCAG
CTCGACTCCG TGCTGCACAC GCTGTCCGAC CGTGAGAAGA AGGTGATCCA GCTACGCTTC
GGCCTCACCG ACGGCCATCC GCGCACGCTG GAGGAGGTCG GCCGCGAGTT CGGGGTCACC
CGGGAGCGCA TCCGGCAGAT CGAGTCGAAG ACGCTGTCGA AGCTGCGCCA CCCGTCCCGA
TCCCAGAAGC TGCGCGACTA CCTGGAGTAG
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| Protein sequence | MPRNLGRSRE GSDEIPPMSP TVLPREAQVD EVKDLITRGK EIGFLTTEDV TVAIQAAELP
PEQAETVLQV LNDEGIEVLE AGGENADEAD LLARRRREEE ELALKAPTSD PVRMYLKEIG
KVPLLTAEEE VDLAKRIEAG LFASEKLAVA TKKTSPQMRR DLEAIERDGQ IAKRKLVEAN
LRLVVSIAKR YVGRGMLFLD LIQEGNLGLI RAVEKFDYTK GYKFSTYATW WIRQAITRAI
ADQARTIRIP VHMVETINKL IRIQRQLLQD LGREPSPEEI AKEMDLTPDK VREILKVSQE
PVSLETPIGE EEDSHLGDFI EDCDAVVPVD AASFILLQEQ LDSVLHTLSD REKKVIQLRF
GLTDGHPRTL EEVGREFGVT RERIRQIESK TLSKLRHPSR SQKLRDYLE
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