| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2041 |
|---|
| Symbol | |
|---|
| ID | 5670442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2453734 |
|---|
| End bp | 2454900 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641240963 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001506384 |
|---|
| Protein GI | 158313876 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.247921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACACCGG ACGGGAACCC CCTCGACGGA TCGCCACTCG AGAACATCGC GCCACTCGAG
AACATCGCGC CACTCGAGAA CATCGCGCCG CTGGAGAACA TCTCGCCGGT CGACAGCACG
CTCCCGACCG GGAGCACGCC GCCGACCGGG AGCACGCCGC CGACCGGGAG TGCCTCGCAG
GTCGGGAGTG CGCCGCAGGT CGGGAGCGTC TCGGCGTTCA GGAGCACGAT TCCGGCCGGG
ACGTTGGTCG ACCTGACCGT CCCCGAGCGA CCGCTGTTGG ACGTGCGCGA CGCCGAGGTG
GCCTACGGAG CCGTCACCGC GCTGCGGGGG ATCTCGCTGC GGGTGGACCG GGGCGAGGTG
GTGGCCCTGC TCGGCGCGAA CGGAGCCGGG AAGACCACCA CCCTGCGGAT GATCTCCGGA
CTCCTCCCGC CCGCTCGCGG CTCGGTCTGG TTCGACGGCG CCCGCCTGGC TGGCACCGGC
AGCGGTACCG GGCTCGGTGG CACTGGCACC GACGGCGGTA CCAGTGGGCA CGGCGATACC
AGCGGGCACG GCGGTGCCGG TGCCTGGTCC GACGGCACGC GGGACTCACC AGGGCTGCCG
GTGCACCGGG TAGCCGCGCT CGGCATCAGC CACGTGCCCG AGGGACGGCG GATCTTCCCG
GCGATGACGG TGGCCGAGAA CCTCGCGATG GGCGCCTACA CCGACCGCCA CCGGGCCTGG
AGCCGTGCCG GCCGCGACGC CCGCCGAGAA GCCCGCCGGG ACGTCCGCCG TGGCCTCGAC
CGCGTGCACG CGCTGTTCCC ACGCCTCGCC GAGCGGGACC GCCAGCCCGC GGGCACGCTC
TCCGGCGGGG AGCAGCAGAT GCTGGCGATC GGGCGGGCAC TGATGGCCCG GCCCCGGCTG
GTCCTGCTGG ACGAGCCCTC GCTCGGGCTG GCCCCGAAAC TGGTCGCGAC GATCTTCGAA
GTGATCGAGG AGATCAACGC GGACGGGGTG ACCGTCCTGC TGGTGGAGCA GAACGCGGCG
GCGGCGCTGC GGATCGCGCA CCGGGGCTAC GTCCTGGACA CCGGCCAGGT AGCACTCGCG
GGCAGTGCTG ACGAGCTGGC CCGCGACCCC CGGGTGCGCG ACGCCTACCT GGGCAGCCCG
AGCGATTCCG ACGCCGTGGC ACCCTAG
|
|---|
| Protein sequence | MTPDGNPLDG SPLENIAPLE NIAPLENIAP LENISPVDST LPTGSTPPTG STPPTGSASQ
VGSAPQVGSV SAFRSTIPAG TLVDLTVPER PLLDVRDAEV AYGAVTALRG ISLRVDRGEV
VALLGANGAG KTTTLRMISG LLPPARGSVW FDGARLAGTG SGTGLGGTGT DGGTSGHGDT
SGHGGAGAWS DGTRDSPGLP VHRVAALGIS HVPEGRRIFP AMTVAENLAM GAYTDRHRAW
SRAGRDARRE ARRDVRRGLD RVHALFPRLA ERDRQPAGTL SGGEQQMLAI GRALMARPRL
VLLDEPSLGL APKLVATIFE VIEEINADGV TVLLVEQNAA AALRIAHRGY VLDTGQVALA
GSADELARDP RVRDAYLGSP SDSDAVAP
|
|---|
| |