| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2029 |
|---|
| Symbol | |
|---|
| ID | 5670430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 2439229 |
|---|
| End bp | 2440773 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 641240950 |
|---|
| Product | kelch repeat-containing protein |
|---|
| Protein accession | YP_001506372 |
|---|
| Protein GI | 158313864 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.100771 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.762762 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTGGT CACGAACGTC CCGCAGATGC GCCTCACGCG CGTTGGTCCT GAGCACCGCG
CTGGCGGCGG CTCTGGCGAC ACCGGCGCTG CTCGCGCCGG GCGCCGAGGC CCTGCCGACC
GGTACGCCAA GCCCCACAAG CCCGACCAGC ACGTCCCCAC AGCCGTCCGC GGGCGCGGCC
GGCGCCTGCC CGGCGCTGCC CCACATCGCC GGCCCGCTGC GCACCTGGGA GACCGCCGCC
GACCTTCCGG CGCCACGCGC CCACGTCGCG GCCACCACGG GATGCGACGG CCGGATCTAC
CTCCTCGGCG GCGAGGCGAC CGCCGCGGGC GGTGGTGGGG TCGGCGGGGG CGTGCCCGCG
ACGCCGTCCG CGACGCCCAC CACCCGCTCA CCGGCGACGT CGACGCCCAG CGGCTCGGCG
ACCCCCAGCC GGACAGCCAC GCCGACAACC ACGCCGACCG CGACGTCGAC CACAACCGGG
TCACCCGGCG GCGAGGGCGG TTCGACGCCG AGCCCGGGCG TGCGGCTGAC CCCGGCCGCC
TTCAACAACG GGGGTGTGCC GACCAGCACG CCCGGCGAGC TCGCCCCCCT GTCCCCGAAC
GGGTCCGCCA CGGACGAGCC CACGACGACG CCGACGACAC CGACCACGCC AACGGCACCC
ACGACGTCCC GCACACCGAC CGCCACGCCG ACCTCTCCGG CCGGCGGCGG CACGCCGACC
GCCACGCCGA ACGGCGCGAC GGGCGGCGGG ACGACCGGCG GCGCGACTGT GGCGGGCGCC
CCGGTTGACA CCGTCCAGGT CTACGACCCG AAGCGGGACG CCTGGTCGAA CGCCCCGGCC
CTGCCGACCG CGCGCGACCA CCTGGCCGCT GCGACCGACA CCGACGGCCG GATCTACGCG
ATCGGCGGCC AGACCGGCGG CGGCACCCCG ACCGACACCG TCGAGGTGTA CACGCCGTCG
AGCGGTGACT GGACGGAGGG CCCGTCGCTG CCGCGCCCGA TGGGCACGCC GAGCGCCACC
CGCGGCACCG ACGGGAAGAT CTACGTCCTC GACGCGACGA CCCTGGCGGT CTACGACCCC
GACTCCGGTG ACTGGACGAC GGGCGGGGCG CCGCCGTCCG GTGCCGGCGC ACCGGTGCTG
GTCGGCCTGC CGGACGGGCG GATTCTCGCC GCGGGCGGCA GCGACGGCGG CTCCGGTTCC
GAGGCGTCGT CCGACGCCTA CGCCTACACG CCGGGCTCGG GTTCGGCGGA CGGCTCCTGG
GCGAAGGTGG CCGACCTGCC GACGGGTGTC TCCGAGGCCG CGGGCGCGAC CGGGCCGGAC
GGCCGGGTCT ACATCGTCGG CGGGCGGGAC AGCGACGGCG ACACCGTCGG CTCCACCCAG
GTGTTCACCC CGGACGACGA CCGCTGGTCC GCGGGTGCGA GCAGCGCCCT CACCGCGCGC
TCCGGCCACG GCGCGGCCAC CGGTGGGGAC GGCCGCGTCT ACGTGGCGGG CGGGACGTCC
GGTTCCGGCG CCCCGCTCGA CTCGGCTGCG GCCCTGGGCG AGTAG
|
|---|
| Protein sequence | MSWSRTSRRC ASRALVLSTA LAAALATPAL LAPGAEALPT GTPSPTSPTS TSPQPSAGAA
GACPALPHIA GPLRTWETAA DLPAPRAHVA ATTGCDGRIY LLGGEATAAG GGGVGGGVPA
TPSATPTTRS PATSTPSGSA TPSRTATPTT TPTATSTTTG SPGGEGGSTP SPGVRLTPAA
FNNGGVPTST PGELAPLSPN GSATDEPTTT PTTPTTPTAP TTSRTPTATP TSPAGGGTPT
ATPNGATGGG TTGGATVAGA PVDTVQVYDP KRDAWSNAPA LPTARDHLAA ATDTDGRIYA
IGGQTGGGTP TDTVEVYTPS SGDWTEGPSL PRPMGTPSAT RGTDGKIYVL DATTLAVYDP
DSGDWTTGGA PPSGAGAPVL VGLPDGRILA AGGSDGGSGS EASSDAYAYT PGSGSADGSW
AKVADLPTGV SEAAGATGPD GRVYIVGGRD SDGDTVGSTQ VFTPDDDRWS AGASSALTAR
SGHGAATGGD GRVYVAGGTS GSGAPLDSAA ALGE
|
|---|
| |